Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
---|---|
Accession | NC_007005 |
Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is lpxA [H]
Identifier: 66044603
GI number: 66044603
Start: 1535365
End: 1536141
Strand: Direct
Name: lpxA [H]
Synonym: Psyr_1355
Alternate gene names: 66044603
Gene position: 1535365-1536141 (Clockwise)
Preceding gene: 66044602
Following gene: 66044604
Centisome position: 25.2
GC content: 59.33
Gene sequence:
>777_bases ATGAGTTTGATTGACCCTCGCGCAATCATCGATCCGACGGCCGTTCTGGCCGACAATGTTGAGGTCGGCCCCTGGTCGAT CATCGGACCCGGTGTGGAAATTGGCGAGGGTACAGTCGTCGGTCCTCACGTTGTCCTCAAGGGGCCAACCAGAATCGGCA AGCACAACCGCATCTACCAGTTTTCATCGGTGGGTGAGGACACGCCTGATCTGAAATACAAGGGCGAGGAAACCCGTCTT GTCATCGGCGATCATAACGTGATCCGCGAAGGCGTGACCATTCACCGCGGGACCGTTCAGGACCGTGCCGAAACCACGCT GGGCGATCACAACCTGATCATGGCCTATGCCCATATCGGGCATGACAGCGTGATCGGCAACCACGTGATTCTGGTCAACA ACACCGCCCTGGCAGGTCACGTGCACGTGGATGACTGGGCGATCCTGTCCGGCTTTACCCTGGTCCATCAGTTCTGCCAC ATCGGTGCGCACAGCTTCTCCGGCATGGGCACTGCGATCGGCAAGGATGTACCGGCGTTCGTCACGGTCTTTGGCAATCC GGCCGAGGCGCGCAGCATGAACTTCGAGGGCATGCGCCGTCGGGGTTTCTCCGAAGAAGCCATTCATGCGCTGCGCAGAG CCTACAAGACGGTTTATCGCCAGGGGCTGACCATCGGTCAGGCGCTGGCCGATCTGGCAGAGCCTGCGGCGCAGTTTCCT GAAGTGGCCGTATTTCTTCAGTCCATTCAGACGTCGACCCGCGGCATCATTCGCTAA
Upstream 100 bases:
>100_bases TCCTGAGCAGCAAGCGTCAGATCTGGAAGTTCGAATGCAAGGCTACCGTTGATGGCAAGGCAGTCTGCTCTGCCGAAATC ATTTGTGCGGAACGCAAACT
Downstream 100 bases:
>100_bases CCATGCCCAGTCCACTCTGTATCGCTCTGGTCGCGGGTGAAGCATCCGGCGATATCCTCGGATCCGGTCTGATGCGTGCC CTCAAGGTGCGCCATCCCGA
Product: UDP-N-acetylglucosamine acyltransferase
Products: NA
Alternate protein names: UDP-N-acetylglucosamine acyltransferase [H]
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MSLIDPRAIIDPTAVLADNVEVGPWSIIGPGVEIGEGTVVGPHVVLKGPTRIGKHNRIYQFSSVGEDTPDLKYKGEETRL VIGDHNVIREGVTIHRGTVQDRAETTLGDHNLIMAYAHIGHDSVIGNHVILVNNTALAGHVHVDDWAILSGFTLVHQFCH IGAHSFSGMGTAIGKDVPAFVTVFGNPAEARSMNFEGMRRRGFSEEAIHALRRAYKTVYRQGLTIGQALADLAEPAAQFP EVAVFLQSIQTSTRGIIR
Sequences:
>Translated_258_residues MSLIDPRAIIDPTAVLADNVEVGPWSIIGPGVEIGEGTVVGPHVVLKGPTRIGKHNRIYQFSSVGEDTPDLKYKGEETRL VIGDHNVIREGVTIHRGTVQDRAETTLGDHNLIMAYAHIGHDSVIGNHVILVNNTALAGHVHVDDWAILSGFTLVHQFCH IGAHSFSGMGTAIGKDVPAFVTVFGNPAEARSMNFEGMRRRGFSEEAIHALRRAYKTVYRQGLTIGQALADLAEPAAQFP EVAVFLQSIQTSTRGIIR >Mature_257_residues SLIDPRAIIDPTAVLADNVEVGPWSIIGPGVEIGEGTVVGPHVVLKGPTRIGKHNRIYQFSSVGEDTPDLKYKGEETRLV IGDHNVIREGVTIHRGTVQDRAETTLGDHNLIMAYAHIGHDSVIGNHVILVNNTALAGHVHVDDWAILSGFTLVHQFCHI GAHSFSGMGTAIGKDVPAFVTVFGNPAEARSMNFEGMRRRGFSEEAIHALRRAYKTVYRQGLTIGQALADLAEPAAQFPE VAVFLQSIQTSTRGIIR
Specific function: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]
COG id: COG1043
COG function: function code M; Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family. LpxA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786378, Length=257, Percent_Identity=52.5291828793774, Blast_Score=270, Evalue=5e-74, Organism=Escherichia coli, GI1786376, Length=238, Percent_Identity=24.7899159663866, Blast_Score=62, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001451 - InterPro: IPR018357 - InterPro: IPR010137 - InterPro: IPR011004 [H]
Pfam domain/function: PF00132 Hexapep [H]
EC number: =2.3.1.129 [H]
Molecular weight: Translated: 27937; Mature: 27806
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: PS00101 HEXAPEP_TRANSFERASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIDPRAIIDPTAVLADNVEVGPWSIIGPGVEIGEGTVVGPHVVLKGPTRIGKHNRIYQ CCCCCCCHHCCCHHHHCCCCCCCCCEEECCCEEECCCEEECCEEEEECCHHCCCCCCEEE FSSVGEDTPDLKYKGEETRLVIGDHNVIREGVTIHRGTVQDRAETTLGDHNLIMAYAHIG ECCCCCCCCCCEECCCCCEEEECCCHHHHCCCEEECCCCHHHHHHCCCCCCEEEEEEECC HDSVIGNHVILVNNTALAGHVHVDDWAILSGFTLVHQFCHIGAHSFSGMGTAIGKDVPAF CCCHHCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEE VTVFGNPAEARSMNFEGMRRRGFSEEAIHALRRAYKTVYRQGLTIGQALADLAEPAAQFP EEEECCCHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH EVAVFLQSIQTSTRGIIR HHHHHHHHHHHHHCCCCC >Mature Secondary Structure SLIDPRAIIDPTAVLADNVEVGPWSIIGPGVEIGEGTVVGPHVVLKGPTRIGKHNRIYQ CCCCCCHHCCCHHHHCCCCCCCCCEEECCCEEECCCEEECCEEEEECCHHCCCCCCEEE FSSVGEDTPDLKYKGEETRLVIGDHNVIREGVTIHRGTVQDRAETTLGDHNLIMAYAHIG ECCCCCCCCCCEECCCCCEEEECCCHHHHCCCEEECCCCHHHHHHCCCCCCEEEEEEECC HDSVIGNHVILVNNTALAGHVHVDDWAILSGFTLVHQFCHIGAHSFSGMGTAIGKDVPAF CCCHHCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEE VTVFGNPAEARSMNFEGMRRRGFSEEAIHALRRAYKTVYRQGLTIGQALADLAEPAAQFP EEEECCCHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH EVAVFLQSIQTSTRGIIR HHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA