| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is ppc [H]
Identifier: 66044566
GI number: 66044566
Start: 1495153
End: 1497789
Strand: Direct
Name: ppc [H]
Synonym: Psyr_1318
Alternate gene names: 66044566
Gene position: 1495153-1497789 (Clockwise)
Preceding gene: 66044563
Following gene: 66044567
Centisome position: 24.54
GC content: 63.44
Gene sequence:
>2637_bases ATGGCCGATATCGATGCGCGTCTGCGCGAAGACGTTCACCTGTTGGGTGAGCTGTTGGGGAATACGATTCGCGAGCAGCG AGGTGCGGAATTTCTCGACAAGATCGAGCGTATTCGCAAAGGTGCCAAAGCGGGCAGGCGCGGTTCCGCAGAAGGGGCCG AGCAACTCAGCTCCAGCGTCGACGGGCTGGGTGATGATGAGCTGCTGCCGGTGGCGCGTGCGTTCAACCAGTTTCTCAAC CTGGCCAATATTGCCGAGCAATATCAGCTCATGCACCGCCGCGATGATAAACAGCCGCTGCCGTTCGAGTCGCGAGTACT GCCCGAGCTGCTTGATCGTCTCAAGGCCGAAGGCCACTCACCTGATGCCCTGGCACGCCAGCTCAGCAAGCTGGAAATCG ACCTGGTGTTGACTGCGCACCCGACCGAGGTGGCACGTCGCACGCTGATTCAGAAATACGACGCCATCGCAGCGCAGCTG GCTGCACTTGATCATCGCGATCTCAATAGCATCGAGCGCACACAGATTACTTCGCGCCTGCAGCGGCTGATTGCCGAGGC CTGGCATACCGAAGAGATCCGGCGCATCCGACCCACCCCGGTCGATGAAGCCAAATGGGGTTTCGCGGTCATCGAACATT CCCTCTGGCACGCCATTCCAAACTACCTGCGCAAGGCTGACCATGCGCTGCATGCGGCCACCGGTCTGCATCTGCCCTTG GAAGCCGCGCCGATCCGTTTTGCCTCCTGGATGGGCGGCGACCGCGACGGCAACCCGAATGTCACCGCCGCTGTCACCCG CGAAGTGCTGTTGCTGGCGCGCTGGATGGCCGCTGACCTGTACCTGCGTGACGTGGACAATCTCGCCGCGGAACTGTCGA TGCAGCAAGCCAGCGACGCTCTGCGTGCCAGCGTGGGTGACAGCGCCGAACCCTATCGGGCAGAACTCAAACGCCTGCGC GAGCGCTTGCGCGCGACGCGCAACTGGGCCAATGCCTCACTGAGCGAAACCCTGCCTGCGCCGGAAGCGGTGCTGCGAGA CAACCGTGAACTGCTCGACCCGCTGCTGCTGTGCTTCCAGTCGCTGCACGAATGCGGCATGGGTGTCATCGCCGACGGCC CGCTTCTGGATTGCCTGCGTCGTGCGGTCACATTCGGCCTGTTCCTGGTGCGTCTGGATGTTCGCCAGGATTCCAGCCGT CACTGCGCAGCGATGACCGAAATCACCGATTATCTGGGGCTGGGTCGCTACGAAGAGTGGGACGAGCAGACCCGCATCGA TTTTCTGCTGCGTGAATTGAATAACCGCAGGCCGCTGCTGCCGAGCTACTTCAAACCGGCCGCCGATACCGCAGAGGTTC TCGCAACCTGCCGCGAGGTGGCGGCCGCCCCGGCGGCGTCGCTGGGGTCCTATGTCATCTCGATGGCCGGCTCGGCTTCG GATGTGCTGGCCGTGCAACTGCTGCTCAAGGAATCCGGGCTGCAGCGGCCCATGCGTGTGGTGCCGTTGTTCGAGACCCT GGCCGACCTGGATAACGCCGGGCCGGTGATCGAGACGCTGCTCGGGCTGCCGGGCTATCGCTCGCGTCTGCACGGCCCGC AAGAGGTGATGATCGGCTATTCCGACTCGGCCAAGGATGCCGGCACCACTGCGGCGGCCTGGGCGCAGTACCGCGCCCAG GAAAGGCTGGTGGAGATCTGCCGCGAGCAGCAGGTCGAATTGCTGCTGTTCCACGGCCGCGGCGGTACAGTCGGTCGTGG CGGCGGCCCGGCGCACGCGGCGATCCTCTCGCAGCCGCCGGGTTCTGTGGCCGGGCGTTTCCGGACCACCGAGCAAGGGG AAATGATTCGTTTCAAATTCGGTCTGCCGGACATCGCCGAGCAGAACCTCAATCTGTATCTGGCTGCCGTGCTGGAAGCG ACCCTGTTGCCACCGCCACCTCCGCAGCCAGCGTGGCGGACGATGATGGACCAGATGGCCGACGACGGGGTCAGTGCCTA CCGAGCGGTGGTGCGCGAGAATCCCGAATTTGTCGAGTATTTCCGCCAGGCGACACCCGAGCAGGAGCTGGGGCGCTTGC CACTCGGCAGTCGTCCGGCCAAGCGCCGCGAGGGCGGTGTAGAAAGTCTTCGTGCCATTCCGTGGATCTTCGCCTGGACG CAGACGCGTCTGATGCTGCCCGCCTGGCTGGGTTGGGAGGCTGCGCTGAGCAAGGCGCTGGAGCGCGGCGAAGGCGAGGT GCTGGCGCAGATGCGTGAGCAGTGGCCGTTCTTCAGAACGCGCATCGACATGCTGGAAATGGTCCTTGCCAAAGCCGATG CGGACATCGCCCGACTCTACGACGAACGTCTGGTCAGTGCTGAGCTGCAACATTTGGGTGCACATTTACGCGACCTATTG TCGCAGGCGTGCAATGTGGTTCTGGGGCTGACCGGGCAGACGCAACTGCTGGCTCACAGCCCTGAAACGCTGGAATTCAT CAGTCTGCGCAACACCTACCTTGACCCGTTGCATTTGCTTCAGGCGGAGCTGCTGTCGCGCTCGCGTAATCGTGAAGCCA GTCTGGACAGTCCTCTGGAACTGGCGCTGCTGGTGTCCGTAGCGGGGATTGCTGCCGGTCTGCGTAACACGGGCTGA
Upstream 100 bases:
>100_bases ACTTTTGGTGCACTGTTGGCATAGCGGATTCGAATTCACGTACGCCCGTGCTACCGAGCGGGTACGCAACTGAGCCCAGA TAAAAAACGGGAGAGGAACG
Downstream 100 bases:
>100_bases TGGATCCGGCCAATGTCATCGTCGGGCCTTTTCGGTCCGGCGATGGCCAGCGCGGGTTTTCCAGGCGGGTCTGCCTGAAA CGTTGATATAGGTCATGTCA
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 878; Mature: 877
Protein sequence:
>878_residues MADIDARLREDVHLLGELLGNTIREQRGAEFLDKIERIRKGAKAGRRGSAEGAEQLSSSVDGLGDDELLPVARAFNQFLN LANIAEQYQLMHRRDDKQPLPFESRVLPELLDRLKAEGHSPDALARQLSKLEIDLVLTAHPTEVARRTLIQKYDAIAAQL AALDHRDLNSIERTQITSRLQRLIAEAWHTEEIRRIRPTPVDEAKWGFAVIEHSLWHAIPNYLRKADHALHAATGLHLPL EAAPIRFASWMGGDRDGNPNVTAAVTREVLLLARWMAADLYLRDVDNLAAELSMQQASDALRASVGDSAEPYRAELKRLR ERLRATRNWANASLSETLPAPEAVLRDNRELLDPLLLCFQSLHECGMGVIADGPLLDCLRRAVTFGLFLVRLDVRQDSSR HCAAMTEITDYLGLGRYEEWDEQTRIDFLLRELNNRRPLLPSYFKPAADTAEVLATCREVAAAPAASLGSYVISMAGSAS DVLAVQLLLKESGLQRPMRVVPLFETLADLDNAGPVIETLLGLPGYRSRLHGPQEVMIGYSDSAKDAGTTAAAWAQYRAQ ERLVEICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEA TLLPPPPPQPAWRTMMDQMADDGVSAYRAVVRENPEFVEYFRQATPEQELGRLPLGSRPAKRREGGVESLRAIPWIFAWT QTRLMLPAWLGWEAALSKALERGEGEVLAQMREQWPFFRTRIDMLEMVLAKADADIARLYDERLVSAELQHLGAHLRDLL SQACNVVLGLTGQTQLLAHSPETLEFISLRNTYLDPLHLLQAELLSRSRNREASLDSPLELALLVSVAGIAAGLRNTG
Sequences:
>Translated_878_residues MADIDARLREDVHLLGELLGNTIREQRGAEFLDKIERIRKGAKAGRRGSAEGAEQLSSSVDGLGDDELLPVARAFNQFLN LANIAEQYQLMHRRDDKQPLPFESRVLPELLDRLKAEGHSPDALARQLSKLEIDLVLTAHPTEVARRTLIQKYDAIAAQL AALDHRDLNSIERTQITSRLQRLIAEAWHTEEIRRIRPTPVDEAKWGFAVIEHSLWHAIPNYLRKADHALHAATGLHLPL EAAPIRFASWMGGDRDGNPNVTAAVTREVLLLARWMAADLYLRDVDNLAAELSMQQASDALRASVGDSAEPYRAELKRLR ERLRATRNWANASLSETLPAPEAVLRDNRELLDPLLLCFQSLHECGMGVIADGPLLDCLRRAVTFGLFLVRLDVRQDSSR HCAAMTEITDYLGLGRYEEWDEQTRIDFLLRELNNRRPLLPSYFKPAADTAEVLATCREVAAAPAASLGSYVISMAGSAS DVLAVQLLLKESGLQRPMRVVPLFETLADLDNAGPVIETLLGLPGYRSRLHGPQEVMIGYSDSAKDAGTTAAAWAQYRAQ ERLVEICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEA TLLPPPPPQPAWRTMMDQMADDGVSAYRAVVRENPEFVEYFRQATPEQELGRLPLGSRPAKRREGGVESLRAIPWIFAWT QTRLMLPAWLGWEAALSKALERGEGEVLAQMREQWPFFRTRIDMLEMVLAKADADIARLYDERLVSAELQHLGAHLRDLL SQACNVVLGLTGQTQLLAHSPETLEFISLRNTYLDPLHLLQAELLSRSRNREASLDSPLELALLVSVAGIAAGLRNTG >Mature_877_residues ADIDARLREDVHLLGELLGNTIREQRGAEFLDKIERIRKGAKAGRRGSAEGAEQLSSSVDGLGDDELLPVARAFNQFLNL ANIAEQYQLMHRRDDKQPLPFESRVLPELLDRLKAEGHSPDALARQLSKLEIDLVLTAHPTEVARRTLIQKYDAIAAQLA ALDHRDLNSIERTQITSRLQRLIAEAWHTEEIRRIRPTPVDEAKWGFAVIEHSLWHAIPNYLRKADHALHAATGLHLPLE AAPIRFASWMGGDRDGNPNVTAAVTREVLLLARWMAADLYLRDVDNLAAELSMQQASDALRASVGDSAEPYRAELKRLRE RLRATRNWANASLSETLPAPEAVLRDNRELLDPLLLCFQSLHECGMGVIADGPLLDCLRRAVTFGLFLVRLDVRQDSSRH CAAMTEITDYLGLGRYEEWDEQTRIDFLLRELNNRRPLLPSYFKPAADTAEVLATCREVAAAPAASLGSYVISMAGSASD VLAVQLLLKESGLQRPMRVVPLFETLADLDNAGPVIETLLGLPGYRSRLHGPQEVMIGYSDSAKDAGTTAAAWAQYRAQE RLVEICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEAT LLPPPPPQPAWRTMMDQMADDGVSAYRAVVRENPEFVEYFRQATPEQELGRLPLGSRPAKRREGGVESLRAIPWIFAWTQ TRLMLPAWLGWEAALSKALERGEGEVLAQMREQWPFFRTRIDMLEMVLAKADADIARLYDERLVSAELQHLGAHLRDLLS QACNVVLGLTGQTQLLAHSPETLEFISLRNTYLDPLHLLQAELLSRSRNREASLDSPLELALLVSVAGIAAGLRNTG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=879, Percent_Identity=55.2901023890785, Blast_Score=939, Evalue=0.0,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 97597; Mature: 97466
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS00781 PEPCASE_1 ; PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADIDARLREDVHLLGELLGNTIREQRGAEFLDKIERIRKGAKAGRRGSAEGAEQLSSSV CCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH DGLGDDELLPVARAFNQFLNLANIAEQYQLMHRRDDKQPLPFESRVLPELLDRLKAEGHS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC PDALARQLSKLEIDLVLTAHPTEVARRTLIQKYDAIAAQLAALDHRDLNSIERTQITSRL HHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH QRLIAEAWHTEEIRRIRPTPVDEAKWGFAVIEHSLWHAIPNYLRKADHALHAATGLHLPL HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EAAPIRFASWMGGDRDGNPNVTAAVTREVLLLARWMAADLYLRDVDNLAAELSMQQASDA HHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRASVGDSAEPYRAELKRLRERLRATRNWANASLSETLPAPEAVLRDNRELLDPLLLCFQ HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCHHHHHHHHHHHH SLHECGMGVIADGPLLDCLRRAVTFGLFLVRLDVRQDSSRHCAAMTEITDYLGLGRYEEW HHHHCCCCEECCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCHHH DEQTRIDFLLRELNNRRPLLPSYFKPAADTAEVLATCREVAAAPAASLGSYVISMAGSAS HHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCH DVLAVQLLLKESGLQRPMRVVPLFETLADLDNAGPVIETLLGLPGYRSRLHGPQEVMIGY HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHCCCCHHEEEEC SDSAKDAGTTAAAWAQYRAQERLVEICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHCCCC GSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPPPQPAWRTMMDQMA CHHHCCCCCCCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH DDGVSAYRAVVRENPEFVEYFRQATPEQELGRLPLGSRPAKRREGGVESLRAIPWIFAWT CCHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH QTRLMLPAWLGWEAALSKALERGEGEVLAQMREQWPFFRTRIDMLEMVLAKADADIARLY HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHH DERLVSAELQHLGAHLRDLLSQACNVVLGLTGQTQLLAHSPETLEFISLRNTYLDPLHLL HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHCCCCHHHHHHHHHHHCCHHHHH QAELLSRSRNREASLDSPLELALLVSVAGIAAGLRNTG HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ADIDARLREDVHLLGELLGNTIREQRGAEFLDKIERIRKGAKAGRRGSAEGAEQLSSSV CCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH DGLGDDELLPVARAFNQFLNLANIAEQYQLMHRRDDKQPLPFESRVLPELLDRLKAEGHS CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC PDALARQLSKLEIDLVLTAHPTEVARRTLIQKYDAIAAQLAALDHRDLNSIERTQITSRL HHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH QRLIAEAWHTEEIRRIRPTPVDEAKWGFAVIEHSLWHAIPNYLRKADHALHAATGLHLPL HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC EAAPIRFASWMGGDRDGNPNVTAAVTREVLLLARWMAADLYLRDVDNLAAELSMQQASDA HHCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LRASVGDSAEPYRAELKRLRERLRATRNWANASLSETLPAPEAVLRDNRELLDPLLLCFQ HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCHHHHHHHHHHHH SLHECGMGVIADGPLLDCLRRAVTFGLFLVRLDVRQDSSRHCAAMTEITDYLGLGRYEEW HHHHCCCCEECCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCHHH DEQTRIDFLLRELNNRRPLLPSYFKPAADTAEVLATCREVAAAPAASLGSYVISMAGSAS HHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCH DVLAVQLLLKESGLQRPMRVVPLFETLADLDNAGPVIETLLGLPGYRSRLHGPQEVMIGY HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHCCCCHHEEEEC SDSAKDAGTTAAAWAQYRAQERLVEICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHCCCC GSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPPPQPAWRTMMDQMA CHHHCCCCCCCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH DDGVSAYRAVVRENPEFVEYFRQATPEQELGRLPLGSRPAKRREGGVESLRAIPWIFAWT CCHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH QTRLMLPAWLGWEAALSKALERGEGEVLAQMREQWPFFRTRIDMLEMVLAKADADIARLY HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHH DERLVSAELQHLGAHLRDLLSQACNVVLGLTGQTQLLAHSPETLEFISLRNTYLDPLHLL HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHCCCCHHHHHHHHHHHCCHHHHH QAELLSRSRNREASLDSPLELALLVSVAGIAAGLRNTG HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA