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The map label for this gene is cph2 [H]

Identifier: 66044557

GI number: 66044557

Start: 1486002

End: 1487006

Strand: Direct

Name: cph2 [H]

Synonym: Psyr_1309

Alternate gene names: 66044557

Gene position: 1486002-1487006 (Clockwise)

Preceding gene: 66044556

Following gene: 66044558

Centisome position: 24.39

GC content: 61.09

Gene sequence:

>1005_bases
ATGAATGACCTGCAAACGGATGAGCTCAAGACACCGGATGAAAACAGCGCAATGGTGCTTCTGGTGGATGATCAGGCCAT
GATTGGTGAAGCCGTACGGCGCGGCCTGGCCGGCCATGAGTCTATCGACTTTCATTTTTGTGCCGACCCGCATCAGGCGA
TCGCCCAGGCCGTGCAGATCAAGCCGACGGTGATTCTTCAGGACCTGGTGATGCCGGGCCTCGATGGGCTGACGCTGGTT
CGCGAGTACCGCAGCAACCCGCTGACCCGCGATATCCCGATCATCGTGCTGTCCACCAAGGAAGACCCGCTGATAAAGAG
CGCGGCGTTCACGGCCGGGGCCAACGACTATCTGGTCAAGCTGCCGGACAACATCGAGCTGGTGGCGCGCATTCGCTATC
ACTCGCGCTCGTACATGACCCTGCTGCAGCGCGATGAAGCCTACCGCGCGCTGCGGGTCAGCCAGCAGCAACTGCTCGAC
ACCAATCTGGTGCTGCAGCGCCTGATGAATTCCGATGGCCTCACGGGGCTGTCGAATCGCCGCCATTTCGACGAGTATCT
GGAACTGGAGTGGCGCCGGGCAATTCGCGAGCAGTCCCAGTTGTCGTTGCTGATGATCGATGTCGACTACTTCAAGCCCT
ACAACGATAACTTCGGGCATCTGGAGGGCGACGAGGCCCTGCGTCAGGTCGCCAAGGCCATTCGTAACAGTTGCAGTCGC
CCGTCGGACTTGCCGGCTCGCTACGGCGGCGAGGAGTTCGCCATGGTCCTGCCCAACACCTCACCGGGCGGGGCGCGTCT
GCTGGCTGAAAAACTGCGCCAGAGCGTTTCAGGCATGAATATTCCGCACATTGCGCCAGCGCCGGGCTCCAGCCTGACCG
TGAGTATCGGTGTGGCGACCATGACGCCACAGCTCGGAATGCCCAGCCGTCAGCTGATTCTGGATGCCGACAAGGGGCTT
TATCAGGCCAAGAACAACGGGCGCAATCAGGTCGCAGCGGGCTGA

Upstream 100 bases:

>100_bases
AATCCGTCCGTTGCCCGCCATAGCACCTCGCTTGATCGAGGTATTTACTCAATGACTGCTCTGCTGAACCCAGCGGCAGT
CGGCGATCAGGAGAAAGATC

Downstream 100 bases:

>100_bases
CGCCGGCAGCGACCGGTAAAATAGGCCTCACAACGCCTGCCCGACGGGCTGCTTTCGTGGCCTTGCCTGGGGTATACTCG
TCGGCTTTGAAAATTTCGCC

Product: GGDEF

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MNDLQTDELKTPDENSAMVLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLTLV
REYRSNPLTRDIPIIVLSTKEDPLIKSAAFTAGANDYLVKLPDNIELVARIRYHSRSYMTLLQRDEAYRALRVSQQQLLD
TNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSLLMIDVDYFKPYNDNFGHLEGDEALRQVAKAIRNSCSR
PSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHIAPAPGSSLTVSIGVATMTPQLGMPSRQLILDADKGL
YQAKNNGRNQVAAG

Sequences:

>Translated_334_residues
MNDLQTDELKTPDENSAMVLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLTLV
REYRSNPLTRDIPIIVLSTKEDPLIKSAAFTAGANDYLVKLPDNIELVARIRYHSRSYMTLLQRDEAYRALRVSQQQLLD
TNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSLLMIDVDYFKPYNDNFGHLEGDEALRQVAKAIRNSCSR
PSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHIAPAPGSSLTVSIGVATMTPQLGMPSRQLILDADKGL
YQAKNNGRNQVAAG
>Mature_334_residues
MNDLQTDELKTPDENSAMVLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQIKPTVILQDLVMPGLDGLTLV
REYRSNPLTRDIPIIVLSTKEDPLIKSAAFTAGANDYLVKLPDNIELVARIRYHSRSYMTLLQRDEAYRALRVSQQQLLD
TNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRAIREQSQLSLLMIDVDYFKPYNDNFGHLEGDEALRQVAKAIRNSCSR
PSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHIAPAPGSSLTVSIGVATMTPQLGMPSRQLILDADKGL
YQAKNNGRNQVAAG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=229, Percent_Identity=30.5676855895196, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=38.4615384615385, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=40.9937888198758, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=34.1176470588235, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=34.5238095238095, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=32.1428571428571, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=35.1851851851852, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082007, Length=181, Percent_Identity=34.2541436464088, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=161, Percent_Identity=32.9192546583851, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081974, Length=131, Percent_Identity=35.1145038167939, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1788085, Length=171, Percent_Identity=30.4093567251462, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=34.1317365269461, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=175, Percent_Identity=30.8571428571429, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788394, Length=153, Percent_Identity=32.0261437908497, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 37076; Mature: 37076

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLQTDELKTPDENSAMVLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQI
CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHC
KPTVILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFTAGANDYLVK
CHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCEEEE
LPDNIELVARIRYHSRSYMTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNR
CCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RHFDEYLELEWRRAIREQSQLSLLMIDVDYFKPYNDNFGHLEGDEALRQVAKAIRNSCSR
HHHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHIAPAPGSSLTVSIGVAT
CCCCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE
MTPQLGMPSRQLILDADKGLYQAKNNGRNQVAAG
ECCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNDLQTDELKTPDENSAMVLLVDDQAMIGEAVRRGLAGHESIDFHFCADPHQAIAQAVQI
CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHC
KPTVILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFTAGANDYLVK
CHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHCCCCCCEEEE
LPDNIELVARIRYHSRSYMTLLQRDEAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNR
CCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RHFDEYLELEWRRAIREQSQLSLLMIDVDYFKPYNDNFGHLEGDEALRQVAKAIRNSCSR
HHHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
PSDLPARYGGEEFAMVLPNTSPGGARLLAEKLRQSVSGMNIPHIAPAPGSSLTVSIGVAT
CCCCCHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE
MTPQLGMPSRQLILDADKGLYQAKNNGRNQVAAG
ECCCCCCCCCEEEEECCCCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]