Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

Click here to switch to the map view.

The map label for this gene is yufQ [H]

Identifier: 66044418

GI number: 66044418

Start: 1320687

End: 1321607

Strand: Reverse

Name: yufQ [H]

Synonym: Psyr_1167

Alternate gene names: 66044418

Gene position: 1321607-1320687 (Counterclockwise)

Preceding gene: 66044419

Following gene: 66044417

Centisome position: 21.69

GC content: 66.78

Gene sequence:

>921_bases
ATGGCTGATATCGACCTGACTACCTTTCTGCTCGCCCTGCTGGCCGGCGCCATCCGCGTCGGCACGCCTTTTCTGTTCGT
CAGCCTGGGCGAATGCCTGACCGAGAAGAGCGGCCGGATCAACCTGGGGCTGGAGGGCATTCTGGTCGCGGGTGCCATGT
CCGGATATGCCGTCGCGTGCCTGAGCGGCTCGGCGTGGCTGGGCGTCGGCGCGGCTGCCGGGGTCGGCATTCTGCTGGGC
CTGCTGCATGGGCTGGCGTGCTCGTTGCCACGGGTCAACGACATCGCGTTCGGCATCGCACTGATCCTGCTCGGCACCGG
CCTGGCGTTCTTTCTCGGCAAAGCCTTTATCCAGCCACAGGCGCCCATGCTGCCTTCACTGGCGCTGGGTGCCTGGAGCA
GCGAAGAACGCGTGCGCTCGGCGCTGAACATCAATGTGCTGTTCTTCGTCGGTGCAGCGCTGGCGTTCGTGCTGCACTGG
GGGCTGCGCACCACGCGCTGGGGGCTGATGCTGCGTCTGGTCGGCGACCATGCCGAAACCGCTCAGGCGCTGGGCTATCG
ACCGCTCAAGGTACGCATCGTGGCCACTGCGGTGGGCGGCGGGCTGGCCGGTATCGGCGGTGCCTATCTGTCGCTCTACT
ACCCCGGCAGCTGGAACGAAGGGCTGTCCAGCGGTCAGGGGCTGATGGCCGTGGCGCTGGTGATCTTTGCCCGCTGGCGC
CCGTTGGCGTGTCTGTGGGCGTCGTTGCTGTTCGGCGCTGCCGGTGCCATCGGCCCGGCCCTGCAAGCGGTCGGTATCAG
CACCGGCTATTACCTGTTTGCCGCAGCACCTTATGCGCTGACGCTGGTGGTGATGTACGCCACCTGTCGCCGTGGTCGCA
CTTTGAACGGCGCGCCGGGCGAACTCAGCCTGACGCGATGA

Upstream 100 bases:

>100_bases
ACCAATCTGCTGCTCTGGGAAGCCCTGGGTGGACGTATCGCCGCCTGGAAGATCAGGCTGACGGCGGCGCCTGCGCCGCT
CGACAAGGGAGCACTGCAAC

Downstream 100 bases:

>100_bases
ACTGATCTTTTTTCGAGGAGACATTGCATGGCCAGTGGTCTTGGTGGTTTGAACAAGTCGCCCAATGGCGTGGTGATCGG
CCTGGCGCAACTGGCGCTGC

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MADIDLTTFLLALLAGAIRVGTPFLFVSLGECLTEKSGRINLGLEGILVAGAMSGYAVACLSGSAWLGVGAAAGVGILLG
LLHGLACSLPRVNDIAFGIALILLGTGLAFFLGKAFIQPQAPMLPSLALGAWSSEERVRSALNINVLFFVGAALAFVLHW
GLRTTRWGLMLRLVGDHAETAQALGYRPLKVRIVATAVGGGLAGIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWR
PLACLWASLLFGAAGAIGPALQAVGISTGYYLFAAAPYALTLVVMYATCRRGRTLNGAPGELSLTR

Sequences:

>Translated_306_residues
MADIDLTTFLLALLAGAIRVGTPFLFVSLGECLTEKSGRINLGLEGILVAGAMSGYAVACLSGSAWLGVGAAAGVGILLG
LLHGLACSLPRVNDIAFGIALILLGTGLAFFLGKAFIQPQAPMLPSLALGAWSSEERVRSALNINVLFFVGAALAFVLHW
GLRTTRWGLMLRLVGDHAETAQALGYRPLKVRIVATAVGGGLAGIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWR
PLACLWASLLFGAAGAIGPALQAVGISTGYYLFAAAPYALTLVVMYATCRRGRTLNGAPGELSLTR
>Mature_305_residues
ADIDLTTFLLALLAGAIRVGTPFLFVSLGECLTEKSGRINLGLEGILVAGAMSGYAVACLSGSAWLGVGAAAGVGILLGL
LHGLACSLPRVNDIAFGIALILLGTGLAFFLGKAFIQPQAPMLPSLALGAWSSEERVRSALNINVLFFVGAALAFVLHWG
LRTTRWGLMLRLVGDHAETAQALGYRPLKVRIVATAVGGGLAGIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWRP
LACLWASLLFGAAGAIGPALQAVGISTGYYLFAAAPYALTLVVMYATCRRGRTLNGAPGELSLTR

Specific function: Part of the binding-protein-dependent transport system. Probably responsible for the translocation of the substrates across the membrane [H]

COG id: COG1079

COG function: function code R; Uncharacterized ABC-type transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 31669; Mature: 31538

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIDLTTFLLALLAGAIRVGTPFLFVSLGECLTEKSGRINLGLEGILVAGAMSGYAVAC
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECHHHHEEECCCCCEEEEE
LSGSAWLGVGAAAGVGILLGLLHGLACSLPRVNDIAFGIALILLGTGLAFFLGKAFIQPQ
ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
APMLPSLALGAWSSEERVRSALNINVLFFVGAALAFVLHWGLRTTRWGLMLRLVGDHAET
CCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHH
AQALGYRPLKVRIVATAVGGGLAGIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWR
HHHHCCCCEEEEEEEEECCCCHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
PLACLWASLLFGAAGAIGPALQAVGISTGYYLFAAAPYALTLVVMYATCRRGRTLNGAPG
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ELSLTR
CCEECC
>Mature Secondary Structure 
ADIDLTTFLLALLAGAIRVGTPFLFVSLGECLTEKSGRINLGLEGILVAGAMSGYAVAC
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECHHHHEEECCCCCEEEEE
LSGSAWLGVGAAAGVGILLGLLHGLACSLPRVNDIAFGIALILLGTGLAFFLGKAFIQPQ
ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
APMLPSLALGAWSSEERVRSALNINVLFFVGAALAFVLHWGLRTTRWGLMLRLVGDHAET
CCCCCCHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHH
AQALGYRPLKVRIVATAVGGGLAGIGGAYLSLYYPGSWNEGLSSGQGLMAVALVIFARWR
HHHHCCCCEEEEEEEEECCCCHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
PLACLWASLLFGAAGAIGPALQAVGISTGYYLFAAAPYALTLVVMYATCRRGRTLNGAPG
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ELSLTR
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]