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The map label for this gene is bdlA [H]

Identifier: 66044126

GI number: 66044126

Start: 992870

End: 994183

Strand: Direct

Name: bdlA [H]

Synonym: Psyr_0871

Alternate gene names: 66044126

Gene position: 992870-994183 (Clockwise)

Preceding gene: 66044123

Following gene: 66044129

Centisome position: 16.29

GC content: 59.13

Gene sequence:

>1314_bases
ATGTTCAACACTCGCTTGAAAAAGGAATTACAGGCACAAAAGGCCGAGTTATCCATGTACCGGCAGATGCAGAAAGGGAT
GGATGCGCAAATGGTCTGTCTGACTCTGGACGCCAGCTACCACATCGTCCACGCCAACGACAACCTTCTCAGTACGCTTG
GCTACTCGCTCGAGCAAGTGCTGGGCAAGGATCTGGACCACTTGGTGCCCACTTACGTCAAACAGCTTGATTGCTACCGC
AGTCTCAAAGTGGCGGTGCAGAAGGGCGAGTCGGTCATCGACAGGTACCGTTTTCTGCATGCCGATGGCCGGCTGATATG
GATTCGCGCCCTCTGGCAGCCGGTGCTGGATGAGCAGGGCAGACTGATGACGTTGCAATGCTACGGATCGGACATCACCC
AGATCGTCGAGACCGCTGCCGAGAACTCTGCGTTTATTCAGGCATTGTTGCGCTCCACCGCCGTGATCGAGTTCAACCTG
AGCGGCCAGGTACTGACTGCCAACGATCAGTTCCTGCGTGGCATGGGTTACAGCCTGGCGCAGATCAAGGGTAAGCATCA
CAGCATGTTCTGTGATCCGGCAGAAACCTCTCAGGCGTCGTACCGGGAATTCTGGGCGATGCTTAACCGTGGCGAGTTCG
TGGCCGGACGCTTCAAGCGTATCGATAGCAACGGGCGTGAGGTCTGGCTGGAAGCAACCTACAACCCGGTCCACGATGCT
CAGGGCAAACTCTACAAGGTGGTCAAGTTCGCCACGATGGTGACCGACCAGGTGGCGCGCGAAGAAGAGGTCAGTCAGGC
CGCCAGCGTGGCGTTTGAAATCTCCCAGCAGACCGACGTCAGCGCCCAGCGCGGCGCGGATGTGGTGCAAAACACTGTCC
AGACCATGCGCAAGATTTCCGAAGAAATGCAGACGGCCTCCTCGGGCATTGAAGCGTTGGGCAAACAGTCACTGCTGATC
AATTCTATCGTGCAGACCATTGGTGGCATTGCCCAGCAGACCAACCTGCTGGCGCTCAACGCCGCCATCGAGGCCGCGCG
TGCCGGTGAGCAGGGCCGTGGCTTTGCCGTGGTGGCTGACGAAGTCCGCCAACTGGCAGGCCGCACCAGCGCCGCAACCG
AAGAAATCGTCAGCGTCGTGCAGCAAAACCAGACGCTGGCCGATGAGGCGGTACGCGGCATGGCCAACAGCCGCACTCAG
GCGGAGCAGGGATTGGTGCTGGCCAACGAGGCCGGTGCAGTGATCGTCGAGATTCAGGAGGGGGCCAAGCAGGTGGTGGG
CGCCGTGGGGCGGTTTGCCAATCAGTTGAAATGA

Upstream 100 bases:

>100_bases
CCGGCGCACTGTAATTCAATCTGCCACCATCAGACGAAATGCCTTAATCCCGTCTACGCTTGTGTCGATATATACGTACA
ACCTCACTATGGGTGCCGTC

Downstream 100 bases:

>100_bases
TCCTGCTGTGCCTCCGCTGCATGGCGCAAATGCCTAAGGCCCGTCAATGCGGGCTTTAGGCGTTTCAATGTTGACTCATG
TTCAGGCGTCACACCGCAAC

Product: PAS

Products: NA

Alternate protein names: Chemotaxis regulator BdlA [H]

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MFNTRLKKELQAQKAELSMYRQMQKGMDAQMVCLTLDASYHIVHANDNLLSTLGYSLEQVLGKDLDHLVPTYVKQLDCYR
SLKVAVQKGESVIDRYRFLHADGRLIWIRALWQPVLDEQGRLMTLQCYGSDITQIVETAAENSAFIQALLRSTAVIEFNL
SGQVLTANDQFLRGMGYSLAQIKGKHHSMFCDPAETSQASYREFWAMLNRGEFVAGRFKRIDSNGREVWLEATYNPVHDA
QGKLYKVVKFATMVTDQVAREEEVSQAASVAFEISQQTDVSAQRGADVVQNTVQTMRKISEEMQTASSGIEALGKQSLLI
NSIVQTIGGIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAGRTSAATEEIVSVVQQNQTLADEAVRGMANSRTQ
AEQGLVLANEAGAVIVEIQEGAKQVVGAVGRFANQLK

Sequences:

>Translated_437_residues
MFNTRLKKELQAQKAELSMYRQMQKGMDAQMVCLTLDASYHIVHANDNLLSTLGYSLEQVLGKDLDHLVPTYVKQLDCYR
SLKVAVQKGESVIDRYRFLHADGRLIWIRALWQPVLDEQGRLMTLQCYGSDITQIVETAAENSAFIQALLRSTAVIEFNL
SGQVLTANDQFLRGMGYSLAQIKGKHHSMFCDPAETSQASYREFWAMLNRGEFVAGRFKRIDSNGREVWLEATYNPVHDA
QGKLYKVVKFATMVTDQVAREEEVSQAASVAFEISQQTDVSAQRGADVVQNTVQTMRKISEEMQTASSGIEALGKQSLLI
NSIVQTIGGIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAGRTSAATEEIVSVVQQNQTLADEAVRGMANSRTQ
AEQGLVLANEAGAVIVEIQEGAKQVVGAVGRFANQLK
>Mature_437_residues
MFNTRLKKELQAQKAELSMYRQMQKGMDAQMVCLTLDASYHIVHANDNLLSTLGYSLEQVLGKDLDHLVPTYVKQLDCYR
SLKVAVQKGESVIDRYRFLHADGRLIWIRALWQPVLDEQGRLMTLQCYGSDITQIVETAAENSAFIQALLRSTAVIEFNL
SGQVLTANDQFLRGMGYSLAQIKGKHHSMFCDPAETSQASYREFWAMLNRGEFVAGRFKRIDSNGREVWLEATYNPVHDA
QGKLYKVVKFATMVTDQVAREEEVSQAASVAFEISQQTDVSAQRGADVVQNTVQTMRKISEEMQTASSGIEALGKQSLLI
NSIVQTIGGIAQQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAGRTSAATEEIVSVVQQNQTLADEAVRGMANSRTQ
AEQGLVLANEAGAVIVEIQEGAKQVVGAVGRFANQLK

Specific function: Essential for biofilm dispersion by sensing environmental cues. May be involved in sensing and transducing signals within cells, resulting in the modulation of c-di-GMP levels, swimming motility and adhesiveness of the bacterial cell surface [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=173, Percent_Identity=41.0404624277457, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788195, Length=164, Percent_Identity=37.8048780487805, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788194, Length=161, Percent_Identity=36.0248447204969, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787690, Length=118, Percent_Identity=44.0677966101695, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1789453, Length=112, Percent_Identity=42.8571428571429, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00015 MCPsignal; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 48128; Mature: 48128

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNTRLKKELQAQKAELSMYRQMQKGMDAQMVCLTLDASYHIVHANDNLLSTLGYSLEQV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHH
LGKDLDHLVPTYVKQLDCYRSLKVAVQKGESVIDRYRFLHADGRLIWIRALWQPVLDEQG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCC
RLMTLQCYGSDITQIVETAAENSAFIQALLRSTAVIEFNLSGQVLTANDQFLRGMGYSLA
CEEEEEECCCHHHHHHHHHHCHHHHHHHHHHHCEEEEEECCCCEEECCHHHHHHCCCHHH
QIKGKHHSMFCDPAETSQASYREFWAMLNRGEFVAGRFKRIDSNGREVWLEATYNPVHDA
HHCCCCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCC
QGKLYKVVKFATMVTDQVAREEEVSQAASVAFEISQQTDVSAQRGADVVQNTVQTMRKIS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHCHHHHHHHHHHHHHHH
EEMQTASSGIEALGKQSLLINSIVQTIGGIAQQTNLLALNAAIEAARAGEQGRGFAVVAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCEEEHHH
EVRQLAGRTSAATEEIVSVVQQNQTLADEAVRGMANSRTQAEQGLVLANEAGAVIVEIQE
HHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCEEEEECCCEEEEEEHH
GAKQVVGAVGRFANQLK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFNTRLKKELQAQKAELSMYRQMQKGMDAQMVCLTLDASYHIVHANDNLLSTLGYSLEQV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHH
LGKDLDHLVPTYVKQLDCYRSLKVAVQKGESVIDRYRFLHADGRLIWIRALWQPVLDEQG
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCC
RLMTLQCYGSDITQIVETAAENSAFIQALLRSTAVIEFNLSGQVLTANDQFLRGMGYSLA
CEEEEEECCCHHHHHHHHHHCHHHHHHHHHHHCEEEEEECCCCEEECCHHHHHHCCCHHH
QIKGKHHSMFCDPAETSQASYREFWAMLNRGEFVAGRFKRIDSNGREVWLEATYNPVHDA
HHCCCCCCEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCC
QGKLYKVVKFATMVTDQVAREEEVSQAASVAFEISQQTDVSAQRGADVVQNTVQTMRKIS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHCHHHHHHHHHHHHHHH
EEMQTASSGIEALGKQSLLINSIVQTIGGIAQQTNLLALNAAIEAARAGEQGRGFAVVAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCCEEEHHH
EVRQLAGRTSAATEEIVSVVQQNQTLADEAVRGMANSRTQAEQGLVLANEAGAVIVEIQE
HHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCEEEEECCCEEEEEEHH
GAKQVVGAVGRFANQLK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]