Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
---|---|
Accession | NC_007005 |
Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is hldE [H]
Identifier: 66043804
GI number: 66043804
Start: 606836
End: 608260
Strand: Direct
Name: hldE [H]
Synonym: Psyr_0537
Alternate gene names: 66043804
Gene position: 606836-608260 (Clockwise)
Preceding gene: 66043803
Following gene: 66043809
Centisome position: 9.96
GC content: 63.23
Gene sequence:
>1425_bases ATGAAGCTATCCATGCCGCGCTTTGATCAGGCCCCTGTCCTGGTGGTGGGCGATGTCATGCTCGACAGATATTGGCATGG TGGTACCTCGCGTATTTCCCCTGAAGCGCCAGTGCCTGTGGTCAAGGTCGATCAGATCGAGGACCGTCCGGGTGGCGCTG CCAACGTGGCCTTGAACATCGCTGCGCTGGGCGCACCGGCTTCGCTGGTCGGTGTGACGGGGGATGACGAAGCTGCCGAG AGTCTGACCAACAGCCTCAAGGCTGCTGGCGTGCTGGCGCGCTTTCAGCGCATCGCCGATCAGCCGACCATCGTCAAACT GCGTGTCATGAGTCGCCACCAGCAACTGTTGCGCATCGATTTCGAAGAACCGTTCAGGACCGACCCGCTGGCCCTGAGCG CAGAGGTCTATAGCTTGCTGGATGGCATCAAGGTGCTGGTCCTGTCGGATTACGGCAAGGGCGCACTGAAAAACCATCAG GCGCTGATCCAGGCCGCCCGCAAGCGCGGCATTCCGGTGCTGGCCGACCCCAAGGGCAAGGATTTCGCGATTTATCGCGG TGCCAGCCTGATCACACCGAACCTCAGCGAATTCGAAGCCATCGTCGGCCATTGTGTCGATGAGGCACAACTGGTCACCA AGGGGGCGCAGTTGATGCAGGAGCTCGATCTCGGCGCGCTGCTGGTGACCCGTGGCGAACATGGCATGACCTTGCTGCGT CCTGATCAGCAGGCGCTGCACCTGCCGGCCCGTGCCCGCGAAGTGTTCGATGTGACCGGTGCTGGCGATACAGTGATTTC TACCCTGGCTGCGGCGATCGCTGCCGGTGAGGAACTGCCGCATGCGGTAGCGCTGGCCAATCTGGCCGCGGGCATCGTGG TCGGCAAGCTGGGCACCGCGGCCATCAGCGCCCCCGAGCTGCGCCGTGCCATTCAGCGCGAAGAGGGCTCCGAACGCGGC GTGCTGGGGCTGGAGCAACTGCTGCTGGCGGTCGACGATGCGCGCGCGCACAAGGAAAGGATCGTTTTCACCAACGGCTG TTTCGACATTCTCCACGCCGGTCATGTGACCTATCTGGAGCAGGCGCGCGCCTTGGGCGATCGCCTGATCGTTGCCGTCA ACGACGATGCGTCCGTCAGCCGCCTGAAAGGGCCGGGCCGACCGATCAACAGCGTCGAACGGCGCATGGCGGTGCTGGCA GGTCTGGGAGCCGTGGACTGGGTCATCAGCTTCCCGGAAGGAACCCCGGAAAACCTGCTGACTCACGTCAAGCCCGACGT GCTGGTCAAGGGCGGTGATTACGGTGTCGATCAGGTGGTCGGTGCCGATATCGTTCAGGCGTACGGCGGCGAAGTGCGTG TGCTGGGGCTGGTGGAAAACAGCTCCACCACCGCGATCGTCGAAAAGATTCGAGGGCAGGGGTAG
Upstream 100 bases:
>100_bases GTCCGCCTGCCTTTTGAGTGGCGTGATTCAACAGCCTGTCGGTTGCAAACCCCTGTGCTAAGATTCCGCCCCTGTCCATT TTTCAAGTACGGGTTGTTCC
Downstream 100 bases:
>100_bases GGGTTAGTTGCAAGCTACAAGCTGCAAGCTACAAGCTACAAGCCACAGCAGATCAAATCAAAAGGCTTGAGGCTTGAGGC TTGAGGCTTGAGGCTTGAGG
Product: bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
Products: NA
Alternate protein names: D-beta-D-heptose 7-phosphate kinase; D-beta-D-heptose 7-phosphotransferase; D-beta-D-heptose 1-phosphate adenosyltransferase [H]
Number of amino acids: Translated: 474; Mature: 474
Protein sequence:
>474_residues MKLSMPRFDQAPVLVVGDVMLDRYWHGGTSRISPEAPVPVVKVDQIEDRPGGAANVALNIAALGAPASLVGVTGDDEAAE SLTNSLKAAGVLARFQRIADQPTIVKLRVMSRHQQLLRIDFEEPFRTDPLALSAEVYSLLDGIKVLVLSDYGKGALKNHQ ALIQAARKRGIPVLADPKGKDFAIYRGASLITPNLSEFEAIVGHCVDEAQLVTKGAQLMQELDLGALLVTRGEHGMTLLR PDQQALHLPARAREVFDVTGAGDTVISTLAAAIAAGEELPHAVALANLAAGIVVGKLGTAAISAPELRRAIQREEGSERG VLGLEQLLLAVDDARAHKERIVFTNGCFDILHAGHVTYLEQARALGDRLIVAVNDDASVSRLKGPGRPINSVERRMAVLA GLGAVDWVISFPEGTPENLLTHVKPDVLVKGGDYGVDQVVGADIVQAYGGEVRVLGLVENSSTTAIVEKIRGQG
Sequences:
>Translated_474_residues MKLSMPRFDQAPVLVVGDVMLDRYWHGGTSRISPEAPVPVVKVDQIEDRPGGAANVALNIAALGAPASLVGVTGDDEAAE SLTNSLKAAGVLARFQRIADQPTIVKLRVMSRHQQLLRIDFEEPFRTDPLALSAEVYSLLDGIKVLVLSDYGKGALKNHQ ALIQAARKRGIPVLADPKGKDFAIYRGASLITPNLSEFEAIVGHCVDEAQLVTKGAQLMQELDLGALLVTRGEHGMTLLR PDQQALHLPARAREVFDVTGAGDTVISTLAAAIAAGEELPHAVALANLAAGIVVGKLGTAAISAPELRRAIQREEGSERG VLGLEQLLLAVDDARAHKERIVFTNGCFDILHAGHVTYLEQARALGDRLIVAVNDDASVSRLKGPGRPINSVERRMAVLA GLGAVDWVISFPEGTPENLLTHVKPDVLVKGGDYGVDQVVGADIVQAYGGEVRVLGLVENSSTTAIVEKIRGQG >Mature_474_residues MKLSMPRFDQAPVLVVGDVMLDRYWHGGTSRISPEAPVPVVKVDQIEDRPGGAANVALNIAALGAPASLVGVTGDDEAAE SLTNSLKAAGVLARFQRIADQPTIVKLRVMSRHQQLLRIDFEEPFRTDPLALSAEVYSLLDGIKVLVLSDYGKGALKNHQ ALIQAARKRGIPVLADPKGKDFAIYRGASLITPNLSEFEAIVGHCVDEAQLVTKGAQLMQELDLGALLVTRGEHGMTLLR PDQQALHLPARAREVFDVTGAGDTVISTLAAAIAAGEELPHAVALANLAAGIVVGKLGTAAISAPELRRAIQREEGSERG VLGLEQLLLAVDDARAHKERIVFTNGCFDILHAGHVTYLEQARALGDRLIVAVNDDASVSRLKGPGRPINSVERRMAVLA GLGAVDWVISFPEGTPENLLTHVKPDVLVKGGDYGVDQVVGADIVQAYGGEVRVLGLVENSSTTAIVEKIRGQG
Specific function: Catalyzes the ADP transfer to D-glycero-D-manno-heptose 1-phosphate, yielding ADP-D,D-heptose [H]
COG id: COG2870
COG function: function code M; ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the cytidylyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1789432, Length=472, Percent_Identity=58.2627118644068, Blast_Score=540, Evalue=1e-155, Organism=Drosophila melanogaster, GI19921220, Length=94, Percent_Identity=42.5531914893617, Blast_Score=74, Evalue=3e-13, Organism=Drosophila melanogaster, GI45550975, Length=94, Percent_Identity=42.5531914893617, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI45550973, Length=94, Percent_Identity=42.5531914893617, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI45550974, Length=94, Percent_Identity=42.5531914893617, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023030 - InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR004821 - InterPro: IPR004820 - InterPro: IPR011913 - InterPro: IPR011914 - InterPro: IPR014729 [H]
Pfam domain/function: PF01467 CTP_transf_2; PF00294 PfkB [H]
EC number: 2.7.-.-
Molecular weight: Translated: 50314; Mature: 50314
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: PS00583 PFKB_KINASES_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSMPRFDQAPVLVVGDVMLDRYWHGGTSRISPEAPVPVVKVDQIEDRPGGAANVALNI CCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEE AALGAPASLVGVTGDDEAAESLTNSLKAAGVLARFQRIADQPTIVKLRVMSRHQQLLRID EEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHEEC FEEPFRTDPLALSAEVYSLLDGIKVLVLSDYGKGALKNHQALIQAARKRGIPVLADPKGK CCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCC DFAIYRGASLITPNLSEFEAIVGHCVDEAQLVTKGAQLMQELDLGALLVTRGEHGMTLLR EEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEC PDQQALHLPARAREVFDVTGAGDTVISTLAAAIAAGEELPHAVALANLAAGIVVGKLGTA CCHHHHCCCHHHHHHEEECCCCHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHCCCHH AISAPELRRAIQREEGSERGVLGLEQLLLAVDDARAHKERIVFTNGCFDILHAGHVTYLE HCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCHHHHH QARALGDRLIVAVNDDASVSRLKGPGRPINSVERRMAVLAGLGAVDWVISFPEGTPENLL HHHHCCCEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHH THVKPDVLVKGGDYGVDQVVGADIVQAYGGEVRVLGLVENSSTTAIVEKIRGQG HHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCCC >Mature Secondary Structure MKLSMPRFDQAPVLVVGDVMLDRYWHGGTSRISPEAPVPVVKVDQIEDRPGGAANVALNI CCCCCCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEE AALGAPASLVGVTGDDEAAESLTNSLKAAGVLARFQRIADQPTIVKLRVMSRHQQLLRID EEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHEEC FEEPFRTDPLALSAEVYSLLDGIKVLVLSDYGKGALKNHQALIQAARKRGIPVLADPKGK CCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCC DFAIYRGASLITPNLSEFEAIVGHCVDEAQLVTKGAQLMQELDLGALLVTRGEHGMTLLR EEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEC PDQQALHLPARAREVFDVTGAGDTVISTLAAAIAAGEELPHAVALANLAAGIVVGKLGTA CCHHHHCCCHHHHHHEEECCCCHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHCCCHH AISAPELRRAIQREEGSERGVLGLEQLLLAVDDARAHKERIVFTNGCFDILHAGHVTYLE HCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCHHHHH QARALGDRLIVAVNDDASVSRLKGPGRPINSVERRMAVLAGLGAVDWVISFPEGTPENLL HHHHCCCEEEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHH THVKPDVLVKGGDYGVDQVVGADIVQAYGGEVRVLGLVENSSTTAIVEKIRGQG HHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA