Click here to switch to the map view.

The map label for this gene is rfaC [H]

Identifier: 66043788

GI number: 66043788

Start: 583435

End: 584499

Strand: Direct

Name: rfaC [H]

Synonym: Psyr_0521

Alternate gene names: 66043788

Gene position: 583435-584499 (Clockwise)

Preceding gene: 66043787

Following gene: 66043789

Centisome position: 9.57

GC content: 64.69

Gene sequence:

>1065_bases
TTGCGGGTACTGCTGATCAAGACGTCTTCACTGGGTGATGTGATCCATGCCTTGCCCGCGCTGACCGACGCGGCGCGCGC
GCTGCCCGGTATTCGCTTCGACTGGGTGGTCGAGGAAGGCTTCGCGGAAATTCCCGCCTGGCATCCGGCGGTCGACAGGG
TCATCCCGGTGGCGATCCGCCGCTGGCGCAAGCACCTCTGGCAGACCTTCAGGTCCGGCGAATGGCGGCGCTTCAAGCAG
CAGGTGCGCGAACAGCGTTATGATCTGGTGATTGATGCGCAGGGCCTGTTCAAAAGTGCCTGGCTGACACGCTATGTCGA
GGCACCGGTGGCCGGTCTGGACCGCGATTCGGCACGCGAGCCGGTCGCCAGTCGCTTTTATGATCGCGCTTTTCCAGTGG
CACGCGGGCAGCATGCGGTCGAGCGGCTGCGTCAGTTGTTCGCTCAGGCACTGGGCTATCCACAGCCGTCCGGCATGGGC
GATTACGGTCTCAAGCCGCTGGCGACGCTGGATGACAGTTTGCAGGCCCCGTTCGTGCTGTTCTTGCATGGCACGACCTG
GGACACCAAGCACTGGCCCGAGCTGTACTGGCGGCAACTGGCTGAATTGATGGCTGCGCGCGGTCTGCAGGTGCAGTTGC
CGTGGGGCAACCCGGCAGAGAAGGCCCGCGCCGAGCGTATTGCCGAGGGTCTGAGCAGTGCGCACGTGCTGCCCAAGCTC
AATCTGGCAGGGGTTGCGCGGGTGCTGGCCAGCGCGCAGGCGTGCGTCGCGGTAGACACCGGCATCGGGCACCTGGCCGC
GGCACTGGATGTGCCGACCATTTCCCTGTTCGGCCCGACCAATCCGGGCCTGACCGGAGCCTACGGCAAGTCGCAGGTGC
ATCTGGCCAGCGACTACCCGGGCTGCACGCCATGCCTGCAAAAGAAATGCACGTACCAACCGACCGCCGACGATCAGCGC
CGGTTCGACCTTAAGCGCGAGTGGCCGATGTGCTTCACTCGCTTGAATCCCGAGCGAGTAGCGAGCCAATTGGGCACGCT
GTTGCTGGCAAAGGAACCTGGCTGA

Upstream 100 bases:

>100_bases
GCCGTTTCGGCCATTACAACTGCATGCGTCTGCTTGAGCCGGACGCCGTGACTCAGGCGCTGAGCCGTCTGAGTAGCACG
CCGGTGGAGGTTGCCTGATT

Downstream 100 bases:

>100_bases
TGCAACTGGCTTTTGTACTCTACAAATACTTCCCGTTCGGTGGCCTGCAACGCGACTTCATGCGCATCGCGCTGGAGTGT
CAGCAGCGCGGTCATCAGGT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MRVLLIKTSSLGDVIHALPALTDAARALPGIRFDWVVEEGFAEIPAWHPAVDRVIPVAIRRWRKHLWQTFRSGEWRRFKQ
QVREQRYDLVIDAQGLFKSAWLTRYVEAPVAGLDRDSAREPVASRFYDRAFPVARGQHAVERLRQLFAQALGYPQPSGMG
DYGLKPLATLDDSLQAPFVLFLHGTTWDTKHWPELYWRQLAELMAARGLQVQLPWGNPAEKARAERIAEGLSSAHVLPKL
NLAGVARVLASAQACVAVDTGIGHLAAALDVPTISLFGPTNPGLTGAYGKSQVHLASDYPGCTPCLQKKCTYQPTADDQR
RFDLKREWPMCFTRLNPERVASQLGTLLLAKEPG

Sequences:

>Translated_354_residues
MRVLLIKTSSLGDVIHALPALTDAARALPGIRFDWVVEEGFAEIPAWHPAVDRVIPVAIRRWRKHLWQTFRSGEWRRFKQ
QVREQRYDLVIDAQGLFKSAWLTRYVEAPVAGLDRDSAREPVASRFYDRAFPVARGQHAVERLRQLFAQALGYPQPSGMG
DYGLKPLATLDDSLQAPFVLFLHGTTWDTKHWPELYWRQLAELMAARGLQVQLPWGNPAEKARAERIAEGLSSAHVLPKL
NLAGVARVLASAQACVAVDTGIGHLAAALDVPTISLFGPTNPGLTGAYGKSQVHLASDYPGCTPCLQKKCTYQPTADDQR
RFDLKREWPMCFTRLNPERVASQLGTLLLAKEPG
>Mature_354_residues
MRVLLIKTSSLGDVIHALPALTDAARALPGIRFDWVVEEGFAEIPAWHPAVDRVIPVAIRRWRKHLWQTFRSGEWRRFKQ
QVREQRYDLVIDAQGLFKSAWLTRYVEAPVAGLDRDSAREPVASRFYDRAFPVARGQHAVERLRQLFAQALGYPQPSGMG
DYGLKPLATLDDSLQAPFVLFLHGTTWDTKHWPELYWRQLAELMAARGLQVQLPWGNPAEKARAERIAEGLSSAHVLPKL
NLAGVARVLASAQACVAVDTGIGHLAAALDVPTISLFGPTNPGLTGAYGKSQVHLASDYPGCTPCLQKKCTYQPTADDQR
RFDLKREWPMCFTRLNPERVASQLGTLLLAKEPG

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=295, Percent_Identity=55.5932203389831, Blast_Score=335, Evalue=3e-93,
Organism=Escherichia coli, GI1790050, Length=374, Percent_Identity=23.2620320855615, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 39489; Mature: 39489

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLIKTSSLGDVIHALPALTDAARALPGIRFDWVVEEGFAEIPAWHPAVDRVIPVAIR
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEHEEHHHHHHCCCCCHHHHHHHHHHHH
RWRKHLWQTFRSGEWRRFKQQVREQRYDLVIDAQGLFKSAWLTRYVEAPVAGLDRDSARE
HHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCCCCCCCHHCC
PVASRFYDRAFPVARGQHAVERLRQLFAQALGYPQPSGMGDYGLKPLATLDDSLQAPFVL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCEEE
FLHGTTWDTKHWPELYWRQLAELMAARGLQVQLPWGNPAEKARAERIAEGLSSAHVLPKL
EEECCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
NLAGVARVLASAQACVAVDTGIGHLAAALDVPTISLFGPTNPGLTGAYGKSQVHLASDYP
CHHHHHHHHHHCHHHEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCC
GCTPCLQKKCTYQPTADDQRRFDLKREWPMCFTRLNPERVASQLGTLLLAKEPG
CCCHHHHCCCCCCCCCCHHHHHCCHHCCCHHHHCCCHHHHHHHHHHEEEECCCC
>Mature Secondary Structure
MRVLLIKTSSLGDVIHALPALTDAARALPGIRFDWVVEEGFAEIPAWHPAVDRVIPVAIR
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEHEEHHHHHHCCCCCHHHHHHHHHHHH
RWRKHLWQTFRSGEWRRFKQQVREQRYDLVIDAQGLFKSAWLTRYVEAPVAGLDRDSARE
HHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHCCCCCCCCCHHCC
PVASRFYDRAFPVARGQHAVERLRQLFAQALGYPQPSGMGDYGLKPLATLDDSLQAPFVL
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCEEE
FLHGTTWDTKHWPELYWRQLAELMAARGLQVQLPWGNPAEKARAERIAEGLSSAHVLPKL
EEECCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
NLAGVARVLASAQACVAVDTGIGHLAAALDVPTISLFGPTNPGLTGAYGKSQVHLASDYP
CHHHHHHHHHHCHHHEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCC
GCTPCLQKKCTYQPTADDQRRFDLKREWPMCFTRLNPERVASQLGTLLLAKEPG
CCCHHHHCCCCCCCCCCHHHHHCCHHCCCHHHHCCCHHHHHHHHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]