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The map label for this gene is pafB [H]

Identifier: 62390375

GI number: 62390375

Start: 1573956

End: 1574933

Strand: Reverse

Name: pafB [H]

Synonym: cg1687

Alternate gene names: 62390375

Gene position: 1574933-1573956 (Counterclockwise)

Preceding gene: 62390376

Following gene: 62390374

Centisome position: 47.98

GC content: 58.69

Gene sequence:

>978_bases
TTGATGTCGGATCGGAAGGAAGATCTCGAGCGTCAGATTAATCTGACTTTCGCGTTTTTAAGCGCCAATTCCTATTCCCG
GAAGTTTTTGACCCAGGTGTGGATTCGAGACAATGTCGGCGATTATAAAGGCCTTACCGATACGGCGTTCCGTAAGAAGC
TGCAGCGCGATCTTGCCTACCTGCGCAGAGTTGGCGTTCCGATTGAGCAGTTCACGGTCACCTCAGGCATAGCTGAAGGC
CAGCAGGCGTACCGTCTGGCCCAGGATTCTTATAAGCTCCCCGAGGTCGAATTCACCCCAGATGAGGCCGCCGTGCTGGG
CATGGCAGGGGAGATGGGCCATAATCAGGAACTCGGCGCCTTCGCGCGTTCGGGGTGGACCAAATTGGCGGCCGGCGGCG
CGCAGCGTGATCTGTCCACGTCCACAGCCTTGACCAATGCGGGCGATTTAGGTTCCTTGTCTGCAAAAACCCTCGATGCG
ATCATCAAAGCCCGCCAATTGGGCAAGCAAATCAGCTTCGAATACCGGCGCGCCCCCAAAGACGCCCCCTCGCTTCGACA
CATGGATCCTTGGGGTCTGGTCCCTGAGCGCGACCGCATCTACCTGGTCGGATTCGACCTCGACCGCCAAGAAGCACGCA
CCTTCCGCATCACCCGCGTCCGCAACATCAACCTCGGCGCCGACGCCACCCACCCCATGCCCGCAGGCACCAACCTCCAA
GACATGGTGCGCGCCCAACTACGCAGAAAGAGTGTGCTTATCGACGCCACCCTGCGCATCACACCCGGCCGCGCAGTGGA
ACTGCGCGCCGCAGGGGTAGAAACCTCCGATGGGGCATGGTTTTTAGAAGACGTTGACCGAGATTGGCTGGTGCGCACCG
CAGCAGCCCATGCGCCAGAAGCTCTCGTTATAGAACCCAAGGACGTCATTGACGATGTCATAGCCTTGCTGCGCAAAGTC
GAAAACGAGGTGGTGTAA

Upstream 100 bases:

>100_bases
TCCTTTTTCCGCAGTGAATTCCGAGGTTGATCAGTTGATTGAGTATATGACCGTTCATGCGGAGAGCTATCGCAGTTAGT
CCGCTCGCACTTCGGAGGCC

Downstream 100 bases:

>100_bases
ACATGCCGAAATCATCCAACAAAATCAGCGACCTTGCCCGCCAGCTTAATCTGTTGCCGTATTTCACCAGGTATAAAGGC
CGTACCGTCATGGAAGCAGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MMSDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAYLRRVGVPIEQFTVTSGIAEG
QQAYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGHNQELGAFARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDA
IIKARQLGKQISFEYRRAPKDAPSLRHMDPWGLVPERDRIYLVGFDLDRQEARTFRITRVRNINLGADATHPMPAGTNLQ
DMVRAQLRRKSVLIDATLRITPGRAVELRAAGVETSDGAWFLEDVDRDWLVRTAAAHAPEALVIEPKDVIDDVIALLRKV
ENEVV

Sequences:

>Translated_325_residues
MMSDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAYLRRVGVPIEQFTVTSGIAEG
QQAYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGHNQELGAFARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDA
IIKARQLGKQISFEYRRAPKDAPSLRHMDPWGLVPERDRIYLVGFDLDRQEARTFRITRVRNINLGADATHPMPAGTNLQ
DMVRAQLRRKSVLIDATLRITPGRAVELRAAGVETSDGAWFLEDVDRDWLVRTAAAHAPEALVIEPKDVIDDVIALLRKV
ENEVV
>Mature_325_residues
MMSDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAYLRRVGVPIEQFTVTSGIAEG
QQAYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGHNQELGAFARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDA
IIKARQLGKQISFEYRRAPKDAPSLRHMDPWGLVPERDRIYLVGFDLDRQEARTFRITRVRNINLGADATHPMPAGTNLQ
DMVRAQLRRKSVLIDATLRITPGRAVELRAAGVETSDGAWFLEDVDRDWLVRTAAAHAPEALVIEPKDVIDDVIALLRKV
ENEVV

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36256; Mature: 36256

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAY
CCCCHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LRRVGVPIEQFTVTSGIAEGQQAYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGHNQELGA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHEEECCCCCCCCCHHHH
FARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDAIIKARQLGKQISFEYRRAPK
HHHCCCHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCC
DAPSLRHMDPWGLVPERDRIYLVGFDLDRQEARTFRITRVRNINLGADATHPMPAGTNLQ
CCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHEEEEEEEEEECCCCCCCCCCCCCCCHH
DMVRAQLRRKSVLIDATLRITPGRAVELRAAGVETSDGAWFLEDVDRDWLVRTAAAHAPE
HHHHHHHHHHHEEEEEEEEECCCCEEEEEECCCCCCCCEEEHHHCCHHHHHHHHHHCCCC
ALVIEPKDVIDDVIALLRKVENEVV
EEEECCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMSDRKEDLERQINLTFAFLSANSYSRKFLTQVWIRDNVGDYKGLTDTAFRKKLQRDLAY
CCCCHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LRRVGVPIEQFTVTSGIAEGQQAYRLAQDSYKLPEVEFTPDEAAVLGMAGEMGHNQELGA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHEEECCCCCCCCCHHHH
FARSGWTKLAAGGAQRDLSTSTALTNAGDLGSLSAKTLDAIIKARQLGKQISFEYRRAPK
HHHCCCHHHHCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCCC
DAPSLRHMDPWGLVPERDRIYLVGFDLDRQEARTFRITRVRNINLGADATHPMPAGTNLQ
CCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHEEEEEEEEEECCCCCCCCCCCCCCCHH
DMVRAQLRRKSVLIDATLRITPGRAVELRAAGVETSDGAWFLEDVDRDWLVRTAAAHAPE
HHHHHHHHHHHEEEEEEEEECCCCEEEEEECCCCCCCCEEEHHHCCHHHHHHHHHHCCCC
ALVIEPKDVIDDVIALLRKVENEVV
EEEECCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]