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The map label for this gene is pafC [H]

Identifier: 62390374

GI number: 62390374

Start: 1572970

End: 1573953

Strand: Reverse

Name: pafC [H]

Synonym: cg1686

Alternate gene names: 62390374

Gene position: 1573953-1572970 (Counterclockwise)

Preceding gene: 62390375

Following gene: 62390373

Centisome position: 47.95

GC content: 50.41

Gene sequence:

>984_bases
ATGCCGAAATCATCCAACAAAATCAGCGACCTTGCCCGCCAGCTTAATCTGTTGCCGTATTTCACCAGGTATAAAGGCCG
TACCGTCATGGAAGCAGCGCGCGATCTTGGCCAACCCTCCTCCCAAATCATGGAAGACCTCAACAGATTATGGATGTGTG
GTCTGCCAGGACTTCTTCCAGGTGACTTGGTGGAGCTTGATCATTCCTTTAAGGAAGTAAAAATCCACAATGCTCAAGGC
ATGGATAAACCCTTGCGCCTCACACCAACTGAAGCCGGTGTTTTGCTGCTGACACTTGAATCCCTGGAATCCCTCCCCGG
TATTGCGAAACAGGAAGCGGTCGTATCTGCTGCGAACAAGCTACGCGCCATCATGGGGGAGTATTCCTCGACTGTTTTCG
ACTCCACTGGAGAAGACCTCGATGCTGAAGTTCTAGAGATCATCCGCGACGCCATGGATTTACACCAGCAGGTCAGTTTT
GAATACCACTCGCACAGATCAGACAACACCAGCCTGAGGCAAGTCAGCCCTGCTCATATCTTCACCCATGAAGGCGAAAC
CTACATCAAAGCCTGGGAAGAAGCTGTGAACCAATGGCGGACGTTTAGGCTTGATCGCATCCGAAGCATTGTGCTTCTTG
ACAGCAAAGCAGTGCACCCGGCGCGAGGGGTTTCAGTATCCACGGACGATCCTTTTGAGTTCGCAAAATCTTCCGATATT
GCCACGTTATTGCTGCGTGAGGACGCAATGTGGTTAGGCAATTACATGGCCATGGAGGTGGATGAAACGGTGGAACCGAT
TCGCGATAGCGACGGATTCAGCTGGCACACAGTCCACTTTCCGCTGCTTTCTAGGGATTGGTTCGTCCGATTCGCGATTG
GCCATGCTGAGCATTTGAAAGTAACTAGTCCCGAAGATCTTCGGAAATGCATAAAGCAAAAGGCTTTTAGTGGTTTGTCA
GCGTATGATCATCACGTAGAGTAA

Upstream 100 bases:

>100_bases
CAGCAGCCCATGCGCCAGAAGCTCTCGTTATAGAACCCAAGGACGTCATTGACGATGTCATAGCCTTGCTGCGCAAAGTC
GAAAACGAGGTGGTGTAAAC

Downstream 100 bases:

>100_bases
CACCCAAGAGTAAGACGCAACATCAATCAATGTGCAAGGGTTTCATTTCTGGAAATCGTGGTCACCCCACATTCACCAGT
CATGAACAAGCTTGTTTAAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MPKSSNKISDLARQLNLLPYFTRYKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLPGDLVELDHSFKEVKIHNAQG
MDKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANKLRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSF
EYHSHRSDNTSLRQVSPAHIFTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDI
ATLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLKVTSPEDLRKCIKQKAFSGLS
AYDHHVE

Sequences:

>Translated_327_residues
MPKSSNKISDLARQLNLLPYFTRYKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLPGDLVELDHSFKEVKIHNAQG
MDKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANKLRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSF
EYHSHRSDNTSLRQVSPAHIFTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDI
ATLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLKVTSPEDLRKCIKQKAFSGLS
AYDHHVE
>Mature_326_residues
PKSSNKISDLARQLNLLPYFTRYKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLPGDLVELDHSFKEVKIHNAQGM
DKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANKLRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSFE
YHSHRSDNTSLRQVSPAHIFTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDIA
TLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLKVTSPEDLRKCIKQKAFSGLSA
YDHHVE

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37018; Mature: 36887

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS00485 A_DEAMINASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSSNKISDLARQLNLLPYFTRYKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLP
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
GDLVELDHSFKEVKIHNAQGMDKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANK
CHHHHHCCCHHHEEEECCCCCCCCCEECCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHH
LRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSFEYHSHRSDNTSLRQVSPAHI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEE
FTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDI
EECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCC
ATLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLK
EEEEEHHHHHHHCCCCEEEHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEE
VTSPEDLRKCIKQKAFSGLSAYDHHVE
CCCHHHHHHHHHHHHHCCCCHHHCCCC
>Mature Secondary Structure 
PKSSNKISDLARQLNLLPYFTRYKGRTVMEAARDLGQPSSQIMEDLNRLWMCGLPGLLP
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
GDLVELDHSFKEVKIHNAQGMDKPLRLTPTEAGVLLLTLESLESLPGIAKQEAVVSAANK
CHHHHHCCCHHHEEEECCCCCCCCCEECCCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHH
LRAIMGEYSSTVFDSTGEDLDAEVLEIIRDAMDLHQQVSFEYHSHRSDNTSLRQVSPAHI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEE
FTHEGETYIKAWEEAVNQWRTFRLDRIRSIVLLDSKAVHPARGVSVSTDDPFEFAKSSDI
EECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCC
ATLLLREDAMWLGNYMAMEVDETVEPIRDSDGFSWHTVHFPLLSRDWFVRFAIGHAEHLK
EEEEEHHHHHHHCCCCEEEHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCCCEEE
VTSPEDLRKCIKQKAFSGLSAYDHHVE
CCCHHHHHHHHHHHHHCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]