| Definition | Corynebacterium glutamicum ATCC 13032, complete genome. |
|---|---|
| Accession | NC_006958 |
| Length | 3,282,708 |
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The map label for this gene is thiD1
Identifier: 62390346
GI number: 62390346
Start: 1541284
End: 1543575
Strand: Reverse
Name: thiD1
Synonym: cg1654
Alternate gene names: 62390346
Gene position: 1543575-1541284 (Counterclockwise)
Preceding gene: 62390347
Following gene: 62390345
Centisome position: 47.02
GC content: 57.5
Gene sequence:
>2292_bases GTGACTGATTTTTCTTTGTATCTGGTCACCGATCCCGTTTTGGGTGGCGGGCCAGAAAAAGTAGCTGGAATTGTTGACAG CGCAATTTCCGGCGGAGTTTCTGTGGTGCAGCTGCGCGATAAGAACTCAGGCGTGGAAGATGTTCGTGCGGCAGCAAAGG AGCTGAAAGAACTCTGCGATGCTCGCGGGGTGGCGCTTGTTGTCAACGATTACTTAGATATCGCCGTTGAGCTGGGTCTT CACCTGCACATTGGTCAAGGCGATACACCTTATACGCAAGCACGGGAGCTGCTTCCAGCTCATCTTGAATTGGGTTTGAG CATTGAAAACCTGGATCAATTGCATGCTGTGATCGCGCAGTGCGCCGAGACTGGTGTGGCATTGCCCGATGTGATTGGCA TTGGTCCGGTGGCCTCTACTGCGACCAAACCAGATGCGGCACCCGCATTGGGTGTGGAGGGCATCGCTGAGATCGCCGCT GTAGCTCAAGACCACGGCATCGCATCAGTAGCTATTGGAGGCGTTGGTCTACGCAACGCGGCCGAACTCGCTGCTACGCC CATCGACGGTCTGTGCGTGGTCTCTGAAATCATGACCGCCGCCAATCCAGCAGCTGCGGCAACTCGCCTGCGGACTGCTT TTCAACCTACTTTCTCGCCTGAAACTCAAACTGAACTCTCTCAAACAGAACTCCAAGGAGCCTTCGTGAATTCGCCTTCT GCCCCACGTGTGTTGTCTATTGCAGGCACTGATCCCACAGGTGGTGCAGGTATTCAGGCTGATCTGAAGTCCATTGCAGC AGGTGGCGGCTACGGCATGTGCGTTGTGACCTCGCTGGTCGCGCAAAACACCCACGGCGTCAACACGATCCACACCCCAC CCTTGACCTTTTTGGAAGAACAGCTGGAAGCGGTCTTTTCCGATGTCACCGTCGATGCCATCAAGCTCGGCATGTTGGGC TCTGCCGACACCGTCGATCTGGTGGCTTCATGGCTTGGTTCCCACGAGCACGGTCCCGTGGTGCTTGATCCCGTCATGAT CGCCACCAGCGGTGATCGCCTACTGGATGCGAGCGCTGAAGAATCGCTGCGCCGCCTGGCCGTGCACGTCGATGTGGTCA CCCCGAATATCCCCGAACTTGCCGTGTTGTGCGACAGTGCTCCTGCCATCACCATGGATGAGGCCATTGCTCAGGCTCAG GGATTTGCGCGGACTCATGACACCATCGTCATTGTCAAGGGTGGACATCTGACTGGCGCGCTTGCTGATAACGCTGTCGT GCGCCCCGACGGCTCGGTGTTCCAGGTGGAAAACCTGCGTGTCAACACCACCAACTCCCATGGCACAGGCTGTTCGCTCT CTGCGTCACTTGCCACCAAGATCGCCGCCGGCGAAAGCGTGGAAAAAGCCCTCGAGTGGTCCACGCGTTGGCTCAACGAG GCGCTCCGCCACGCCGATCACTTGGCTGTAGGTACTGGAAACGGCCCTGTCGACCACGGTCACCTGGCACGACGCATGAC CCACGCGGCGGAAACCACTCCCTGGGCACACCTTCGGGCTCCGCGCCTAGACGGCGCCACCGCGGCAAGTTTCACCACAC CCTCCACGGTAAAAAGCCCAGCTCCACGCATCGAACCTGCCGGGCCTTTCACGCGCGCGCTGTGGGAGGCAAGTGGCGAT ATCATCGCGGGCATCAACAGTTCTGACTTCATCACCATGCTTGGCGACGGCACCCTCCGGCGCCCAGAGTTCGATTTCTA CATCGACCAAGACGCCCAATACCTCGCCCAATATTCCCGAGCATTGGCACGACTCTCTTCGATCGCACCTGATTCACACG CACAAATCGAATGGGCTCAAAGCGCTGCAGAATGCCTGGTCGTGGAAGCCGAACTGCACCGCTCTTATATGGCAGGGAAA GAAGTCTCCGCACCATCACACATCACGATGGCCTATACCGACTTCCTCATCGCACGCACCTACACTGAGGACTACGTCTG CGGTGTGGCGGCCGTACTGCCGTGCTACTGGCTCTACGCAGAGATCGGATTGATGCTGGCTGAACAAAACCACGACGAGC ACCCCTACAAGGACTGGCTCAACACTTACTCCGGTGAAGAATTCATCGCTGGAACCCGTGCGGCTATCGCACGTCTAGAA AAGGCTCTAGAAAATGCGGGTGCTGAACAACGCGTCGATGCTGCTCGAGCATTCTTGAGCGCCTCTGTTCATGAACGCGA GTTCTTTGATCAGGCAACTCGCCATGGTTGGACAATGGTTGGATCTAGCTAA
Upstream 100 bases:
>100_bases GCGCCAGGCAGCTTTGCGGTGGCGTTTATTGATGCGCTTTATGACGTGGATGCCCAGGCTGTGGCCTCGTTGGTTGATGT GCGAGAGGCCTGAAAAGTAC
Downstream 100 bases:
>100_bases ACCTGATCTCACTGCGCGCCGGGCCATCTCTGTCAATTAGGAGATGGCCCGGCGCGCTTTTGCAGCTGTGGGGTTGGGCT GGGGGCAAGTGTTCATGTAG
Product: multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase
Products: NA
Alternate protein names: Thiamine-phosphate pyrophosphorylase; TMP pyrophosphorylase; TMP-PPase; Thiamine-phosphate synthase; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine kinase; HMP kinase; Hydroxymethylpyrimidine phosphate kinase; HMP-P kinase; HMP-phosphate kinase; HMPP kinase
Number of amino acids: Translated: 763; Mature: 762
Protein sequence:
>763_residues MTDFSLYLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNSGVEDVRAAAKELKELCDARGVALVVNDYLDIAVELGL HLHIGQGDTPYTQARELLPAHLELGLSIENLDQLHAVIAQCAETGVALPDVIGIGPVASTATKPDAAPALGVEGIAEIAA VAQDHGIASVAIGGVGLRNAAELAATPIDGLCVVSEIMTAANPAAAATRLRTAFQPTFSPETQTELSQTELQGAFVNSPS APRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTSLVAQNTHGVNTIHTPPLTFLEEQLEAVFSDVTVDAIKLGMLG SADTVDLVASWLGSHEHGPVVLDPVMIATSGDRLLDASAEESLRRLAVHVDVVTPNIPELAVLCDSAPAITMDEAIAQAQ GFARTHDTIVIVKGGHLTGALADNAVVRPDGSVFQVENLRVNTTNSHGTGCSLSASLATKIAAGESVEKALEWSTRWLNE ALRHADHLAVGTGNGPVDHGHLARRMTHAAETTPWAHLRAPRLDGATAASFTTPSTVKSPAPRIEPAGPFTRALWEASGD IIAGINSSDFITMLGDGTLRRPEFDFYIDQDAQYLAQYSRALARLSSIAPDSHAQIEWAQSAAECLVVEAELHRSYMAGK EVSAPSHITMAYTDFLIARTYTEDYVCGVAAVLPCYWLYAEIGLMLAEQNHDEHPYKDWLNTYSGEEFIAGTRAAIARLE KALENAGAEQRVDAARAFLSASVHEREFFDQATRHGWTMVGSS
Sequences:
>Translated_763_residues MTDFSLYLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNSGVEDVRAAAKELKELCDARGVALVVNDYLDIAVELGL HLHIGQGDTPYTQARELLPAHLELGLSIENLDQLHAVIAQCAETGVALPDVIGIGPVASTATKPDAAPALGVEGIAEIAA VAQDHGIASVAIGGVGLRNAAELAATPIDGLCVVSEIMTAANPAAAATRLRTAFQPTFSPETQTELSQTELQGAFVNSPS APRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTSLVAQNTHGVNTIHTPPLTFLEEQLEAVFSDVTVDAIKLGMLG SADTVDLVASWLGSHEHGPVVLDPVMIATSGDRLLDASAEESLRRLAVHVDVVTPNIPELAVLCDSAPAITMDEAIAQAQ GFARTHDTIVIVKGGHLTGALADNAVVRPDGSVFQVENLRVNTTNSHGTGCSLSASLATKIAAGESVEKALEWSTRWLNE ALRHADHLAVGTGNGPVDHGHLARRMTHAAETTPWAHLRAPRLDGATAASFTTPSTVKSPAPRIEPAGPFTRALWEASGD IIAGINSSDFITMLGDGTLRRPEFDFYIDQDAQYLAQYSRALARLSSIAPDSHAQIEWAQSAAECLVVEAELHRSYMAGK EVSAPSHITMAYTDFLIARTYTEDYVCGVAAVLPCYWLYAEIGLMLAEQNHDEHPYKDWLNTYSGEEFIAGTRAAIARLE KALENAGAEQRVDAARAFLSASVHEREFFDQATRHGWTMVGSS >Mature_762_residues TDFSLYLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNSGVEDVRAAAKELKELCDARGVALVVNDYLDIAVELGLH LHIGQGDTPYTQARELLPAHLELGLSIENLDQLHAVIAQCAETGVALPDVIGIGPVASTATKPDAAPALGVEGIAEIAAV AQDHGIASVAIGGVGLRNAAELAATPIDGLCVVSEIMTAANPAAAATRLRTAFQPTFSPETQTELSQTELQGAFVNSPSA PRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTSLVAQNTHGVNTIHTPPLTFLEEQLEAVFSDVTVDAIKLGMLGS ADTVDLVASWLGSHEHGPVVLDPVMIATSGDRLLDASAEESLRRLAVHVDVVTPNIPELAVLCDSAPAITMDEAIAQAQG FARTHDTIVIVKGGHLTGALADNAVVRPDGSVFQVENLRVNTTNSHGTGCSLSASLATKIAAGESVEKALEWSTRWLNEA LRHADHLAVGTGNGPVDHGHLARRMTHAAETTPWAHLRAPRLDGATAASFTTPSTVKSPAPRIEPAGPFTRALWEASGDI IAGINSSDFITMLGDGTLRRPEFDFYIDQDAQYLAQYSRALARLSSIAPDSHAQIEWAQSAAECLVVEAELHRSYMAGKE VSAPSHITMAYTDFLIARTYTEDYVCGVAAVLPCYWLYAEIGLMLAEQNHDEHPYKDWLNTYSGEEFIAGTRAAIARLEK ALENAGAEQRVDAARAFLSASVHEREFFDQATRHGWTMVGSS
Specific function: Catalyzes the phosphorylation of hydroxymethylpyrimidine phosphate (HMP-P) to HMP-PP, and of HMP to HMP-P
COG id: COG0351
COG function: function code H; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the thiaminase-2 family
Homologues:
Organism=Escherichia coli, GI1788420, Length=258, Percent_Identity=44.5736434108527, Blast_Score=194, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6325378, Length=506, Percent_Identity=26.0869565217391, Blast_Score=140, Evalue=6e-34, Organism=Saccharomyces cerevisiae, GI6324517, Length=391, Percent_Identity=32.4808184143223, Blast_Score=138, Evalue=4e-33, Organism=Saccharomyces cerevisiae, GI6324997, Length=397, Percent_Identity=31.4861460957179, Blast_Score=136, Evalue=1e-32, Organism=Saccharomyces cerevisiae, GI6325042, Length=258, Percent_Identity=29.0697674418605, Blast_Score=97, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): THIED_CORGL (Q8NQH1)
Other databases:
- EMBL: BA000036 - EMBL: BX927152 - RefSeq: NP_600680.3 - RefSeq: YP_225748.1 - ProteinModelPortal: Q8NQH1 - GeneID: 1019437 - GeneID: 3345397 - GenomeReviews: BA000036_GR - GenomeReviews: BX927147_GR - KEGG: cgb:cg1654 - KEGG: cgl:NCgl1407 - HOGENOM: HBG476673 - OMA: KIGMLGD - PhylomeDB: Q8NQH1 - ProtClustDB: PRK09517 - BioCyc: CGLU196627:CG1654-MONOMER - BRENDA: 2.5.1.3 - BRENDA: 2.7.4.7 - HAMAP: MF_00097 - InterPro: IPR013785 - InterPro: IPR016084 - InterPro: IPR013749 - InterPro: IPR004399 - InterPro: IPR004305 - InterPro: IPR022998 - InterPro: IPR003733 - Gene3D: G3DSA:3.20.20.70 - Gene3D: G3DSA:1.20.910.10 - TIGRFAMs: TIGR00097 - TIGRFAMs: TIGR00693
Pfam domain/function: PF08543 Phos_pyr_kin; PF03070 TENA_THI-4; PF02581 TMP-TENI; SSF48613 Heme_oxygenase; SSF51391 TMP_synthase
EC number: =2.5.1.3; =2.7.1.49; =2.7.4.7
Molecular weight: Translated: 80356; Mature: 80225
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: BINDING 282-282
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDFSLYLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNSGVEDVRAAAKELKELCD CCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC ARGVALVVNDYLDIAVELGLHLHIGQGDTPYTQARELLPAHLELGLSIENLDQLHAVIAQ CCCEEEEEHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH CAETGVALPDVIGIGPVASTATKPDAAPALGVEGIAEIAAVAQDHGIASVAIGGVGLRNA HHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH AELAATPIDGLCVVSEIMTAANPAAAATRLRTAFQPTFSPETQTELSQTELQGAFVNSPS HHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCC APRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTSLVAQNTHGVNTIHTPPLTFLEE CCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH QLEAVFSDVTVDAIKLGMLGSADTVDLVASWLGSHEHGPVVLDPVMIATSGDRLLDASAE HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCCCCHHH ESLRRLAVHVDVVTPNIPELAVLCDSAPAITMDEAIAQAQGFARTHDTIVIVKGGHLTGA HHHHHHEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEEE LADNAVVRPDGSVFQVENLRVNTTNSHGTGCSLSASLATKIAAGESVEKALEWSTRWLNE CCCCEEECCCCCEEEEEEEEEECCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHH ALRHADHLAVGTGNGPVDHGHLARRMTHAAETTPWAHLRAPRLDGATAASFTTPSTVKSP HHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCCCCCCCCCC APRIEPAGPFTRALWEASGDIIAGINSSDFITMLGDGTLRRPEFDFYIDQDAQYLAQYSR CCCCCCCCHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHHH ALARLSSIAPDSHAQIEWAQSAAECLVVEAELHRSYMAGKEVSAPSHITMAYTDFLIART HHHHHHHCCCCCCCHHHHHHHHHHEEEEHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHH YTEDYVCGVAAVLPCYWLYAEIGLMLAEQNHDEHPYKDWLNTYSGEEFIAGTRAAIARLE CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHH KALENAGAEQRVDAARAFLSASVHEREFFDQATRHGWTMVGSS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC >Mature Secondary Structure TDFSLYLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNSGVEDVRAAAKELKELCD CCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC ARGVALVVNDYLDIAVELGLHLHIGQGDTPYTQARELLPAHLELGLSIENLDQLHAVIAQ CCCEEEEEHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH CAETGVALPDVIGIGPVASTATKPDAAPALGVEGIAEIAAVAQDHGIASVAIGGVGLRNA HHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH AELAATPIDGLCVVSEIMTAANPAAAATRLRTAFQPTFSPETQTELSQTELQGAFVNSPS HHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCC APRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTSLVAQNTHGVNTIHTPPLTFLEE CCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH QLEAVFSDVTVDAIKLGMLGSADTVDLVASWLGSHEHGPVVLDPVMIATSGDRLLDASAE HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCCCCHHH ESLRRLAVHVDVVTPNIPELAVLCDSAPAITMDEAIAQAQGFARTHDTIVIVKGGHLTGA HHHHHHEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEEE LADNAVVRPDGSVFQVENLRVNTTNSHGTGCSLSASLATKIAAGESVEKALEWSTRWLNE CCCCEEECCCCCEEEEEEEEEECCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHH ALRHADHLAVGTGNGPVDHGHLARRMTHAAETTPWAHLRAPRLDGATAASFTTPSTVKSP HHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCCCCCCCCCC APRIEPAGPFTRALWEASGDIIAGINSSDFITMLGDGTLRRPEFDFYIDQDAQYLAQYSR CCCCCCCCHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCEEECCHHHHHHHHHH ALARLSSIAPDSHAQIEWAQSAAECLVVEAELHRSYMAGKEVSAPSHITMAYTDFLIART HHHHHHHCCCCCCCHHHHHHHHHHEEEEHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHH YTEDYVCGVAAVLPCYWLYAEIGLMLAEQNHDEHPYKDWLNTYSGEEFIAGTRAAIARLE CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHH KALENAGAEQRVDAARAFLSASVHEREFFDQATRHGWTMVGSS HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12948626