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The map label for this gene is vdlC [H]

Identifier: 62389923

GI number: 62389923

Start: 1089130

End: 1089687

Strand: Reverse

Name: vdlC [H]

Synonym: cg1176

Alternate gene names: 62389923

Gene position: 1089687-1089130 (Counterclockwise)

Preceding gene: 62389924

Following gene: 62389922

Centisome position: 33.19

GC content: 61.47

Gene sequence:

>558_bases
ATGACAATCGATGAAGGCCGTCGCCAGTTCGAGGTCAATGTATTCGGCGCGATGGCCCTCACCCGACTCGTCCTGCCCCA
CATGCAGAAACAAAAGTGGGGGACGATCGTGAACATCACATCGATGGGCGGGAAGATCTACACGCCTCTCGGCGGCTGGT
ATCACGGCACCAAGTTCGCCCTCGAGGCCCTCTCGGACGCCCTCCGCCTGGAGGTCGCCCCATTCGGCATCGACGTTGTT
GTCATCGAACCGGGCGGCATCGCCACCGAGTGGGGAGGAATCGCTGCCGACAATCTCGACGCAGTGTCGAAAGACAGCGC
ATACAAGCGCCAGGCTGACGCAGTATCGAAGTCGTTGCGATCTGAGGCGAACAGCAACCGCAACTCACCACCGTCGGTTG
TCGCCGATGCGATTGGAAAGGCCGTGACGGCACGTCACCCCAAGACCCGCTATGCCATCGGCTTCGGTGCCAAACCGCTG
ATTGCCTCGCGCAACATCCTCACCGATCGCCAGTTCGACCCAGTGATCACTCGAGCGACTGGCGTCCCCCGCGACTGA

Upstream 100 bases:

>100_bases
CCATCACTCGGCTTCACCGTCTACGGTGCTGCCCGCAGGACAGAGCGCCCCCAAAAGCTCGCTTCAGACGGGATCCACCC
CCTCGAGATGGACGTCACCG

Downstream 100 bases:

>100_bases
CCACTCTTCTGCGCCCGTCACACGTTGAACTTGAACTCCACCGAGTTCCGGCGGATACCAACCTCTAACCTCAGCCAACT
TTTGGACCGAGGCCTCCCCG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MTIDEGRRQFEVNVFGAMALTRLVLPHMQKQKWGTIVNITSMGGKIYTPLGGWYHGTKFALEALSDALRLEVAPFGIDVV
VIEPGGIATEWGGIAADNLDAVSKDSAYKRQADAVSKSLRSEANSNRNSPPSVVADAIGKAVTARHPKTRYAIGFGAKPL
IASRNILTDRQFDPVITRATGVPRD

Sequences:

>Translated_185_residues
MTIDEGRRQFEVNVFGAMALTRLVLPHMQKQKWGTIVNITSMGGKIYTPLGGWYHGTKFALEALSDALRLEVAPFGIDVV
VIEPGGIATEWGGIAADNLDAVSKDSAYKRQADAVSKSLRSEANSNRNSPPSVVADAIGKAVTARHPKTRYAIGFGAKPL
IASRNILTDRQFDPVITRATGVPRD
>Mature_184_residues
TIDEGRRQFEVNVFGAMALTRLVLPHMQKQKWGTIVNITSMGGKIYTPLGGWYHGTKFALEALSDALRLEVAPFGIDVVV
IEPGGIATEWGGIAADNLDAVSKDSAYKRQADAVSKSLRSEANSNRNSPPSVVADAIGKAVTARHPKTRYAIGFGAKPLI
ASRNILTDRQFDPVITRATGVPRD

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI44680136, Length=162, Percent_Identity=30.8641975308642, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI44680133, Length=162, Percent_Identity=30.8641975308642, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI17738292, Length=162, Percent_Identity=30.8641975308642, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI19743808, Length=187, Percent_Identity=26.7379679144385, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI40548397, Length=170, Percent_Identity=32.9411764705882, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI214010158, Length=170, Percent_Identity=32.9411764705882, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI214010156, Length=170, Percent_Identity=32.9411764705882, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI22758144, Length=170, Percent_Identity=32.9411764705882, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI50726952, Length=191, Percent_Identity=34.0314136125654, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI20149619, Length=98, Percent_Identity=41.8367346938776, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI150247226, Length=159, Percent_Identity=30.8176100628931, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI22507405, Length=199, Percent_Identity=27.6381909547739, Blast_Score=71, Evalue=7e-13,
Organism=Escherichia coli, GI1786701, Length=169, Percent_Identity=34.3195266272189, Blast_Score=84, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17557780, Length=165, Percent_Identity=29.6969696969697, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=165, Percent_Identity=30.9090909090909, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=165, Percent_Identity=31.5151515151515, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=154, Percent_Identity=31.8181818181818, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358495, Length=88, Percent_Identity=39.7727272727273, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 19962; Mature: 19831

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDEGRRQFEVNVFGAMALTRLVLPHMQKQKWGTIVNITSMGGKIYTPLGGWYHGTKFA
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCHHHHH
LEALSDALRLEVAPFGIDVVVIEPGGIATEWGGIAADNLDAVSKDSAYKRQADAVSKSLR
HHHHHHHHEEEEECCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SEANSNRNSPPSVVADAIGKAVTARHPKTRYAIGFGAKPLIASRNILTDRQFDPVITRAT
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCEEECC
GVPRD
CCCCC
>Mature Secondary Structure 
TIDEGRRQFEVNVFGAMALTRLVLPHMQKQKWGTIVNITSMGGKIYTPLGGWYHGTKFA
CCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCHHHHH
LEALSDALRLEVAPFGIDVVVIEPGGIATEWGGIAADNLDAVSKDSAYKRQADAVSKSLR
HHHHHHHHEEEEECCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SEANSNRNSPPSVVADAIGKAVTARHPKTRYAIGFGAKPLIASRNILTDRQFDPVITRAT
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCEEECC
GVPRD
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]