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The map label for this gene is yvoA [H]

Identifier: 62389051

GI number: 62389051

Start: 167835

End: 168596

Strand: Reverse

Name: yvoA [H]

Synonym: cg0196

Alternate gene names: 62389051

Gene position: 168596-167835 (Counterclockwise)

Preceding gene: 62389064

Following gene: 62389048

Centisome position: 5.14

GC content: 58.4

Gene sequence:

>762_bases
ATGACCACCGAAGCTCCCATTTGGCCAGCCGAACTCTTCGAAGACCTCGACCGCAACGGACCAATCCCCCTCTACTTCCA
AGTAGCCCAACGCCTCGAAGACGGCATCCGCAGCGGAGTCCTCCCACCCGGAGCACGCCTAGAAAACGAGATCTCCGTGG
CGAAACACCTCAACGTATCCCGCCCCACCGTCCGACGCGCCATCCAAGAAGTCGTAGACAAAGGCCTCTTAGTTCGCCGC
CGCGGTGTTGGCACCCAGGTCGTCCAAAGCCACGTCACCCGCCCAGTCGAACTGACCAGTTTCTTCAACGACCTCAAAAA
CGCCAACCTGGACCCCAAAACCCGAGTCCTCGAGCACCGCCTCCTTGCAGCAAGTTCCGCCATCGCAGAAAAACTCGGAG
TTTCCGCAGGTGACGAAGTCCTCCTCATCCGCCGCCTCCGCTCCACCGGAGACATCCCCGTAGCGATCCTGGAAAACTAC
CTCCCCCCAGCGTTCAACGACGTCTCCCTCGACGAACTAGAAAAGGGTGGACTCTACGATGCGCTGCGCAGCCGAGGTGT
TGTCTTAAAAATCGCCAACCAGAAAATCGGTGCGCGCCGAGCAGTCGGTGAAGAAAGCACCCTCCTCGACATCGAAGACG
GCGGACCACTTCTCACCGTCGAACGCGTTGCATTGGATAATTCCGGCCAAGTAATCGAGTTGGGAAGCCACTGCTACCGC
CCAGATATGTACAACTTTGAAACCACTCTGGTGGCCAGGTAA

Upstream 100 bases:

>100_bases
CACGGATTTACCAAGACCACCACCCGCAACTCAGTTACATTGTTCAAATGTCCTAACACATTTACATGAGCTTGTTGGGT
GGGCAACGAAAGGAGACATC

Downstream 100 bases:

>100_bases
GAAATAAACCAAAGAGCCCTTCTGAACTGGAGCTCTTGGTCTGATATGGCATTTTCAAGGCTGGAAAACTGCTCTATCAG
ACCAAACGGATGCTGAATTT

Product: GntR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MTTEAPIWPAELFEDLDRNGPIPLYFQVAQRLEDGIRSGVLPPGARLENEISVAKHLNVSRPTVRRAIQEVVDKGLLVRR
RGVGTQVVQSHVTRPVELTSFFNDLKNANLDPKTRVLEHRLLAASSAIAEKLGVSAGDEVLLIRRLRSTGDIPVAILENY
LPPAFNDVSLDELEKGGLYDALRSRGVVLKIANQKIGARRAVGEESTLLDIEDGGPLLTVERVALDNSGQVIELGSHCYR
PDMYNFETTLVAR

Sequences:

>Translated_253_residues
MTTEAPIWPAELFEDLDRNGPIPLYFQVAQRLEDGIRSGVLPPGARLENEISVAKHLNVSRPTVRRAIQEVVDKGLLVRR
RGVGTQVVQSHVTRPVELTSFFNDLKNANLDPKTRVLEHRLLAASSAIAEKLGVSAGDEVLLIRRLRSTGDIPVAILENY
LPPAFNDVSLDELEKGGLYDALRSRGVVLKIANQKIGARRAVGEESTLLDIEDGGPLLTVERVALDNSGQVIELGSHCYR
PDMYNFETTLVAR
>Mature_252_residues
TTEAPIWPAELFEDLDRNGPIPLYFQVAQRLEDGIRSGVLPPGARLENEISVAKHLNVSRPTVRRAIQEVVDKGLLVRRR
GVGTQVVQSHVTRPVELTSFFNDLKNANLDPKTRVLEHRLLAASSAIAEKLGVSAGDEVLLIRRLRSTGDIPVAILENYL
PPAFNDVSLDELEKGGLYDALRSRGVVLKIANQKIGARRAVGEESTLLDIEDGGPLLTVERVALDNSGQVIELGSHCYRP
DMYNFETTLVAR

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=239, Percent_Identity=30.5439330543933, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786950, Length=237, Percent_Identity=30.379746835443, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790540, Length=225, Percent_Identity=30.2222222222222, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI87082252, Length=225, Percent_Identity=27.5555555555556, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790118, Length=233, Percent_Identity=26.1802575107296, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27877; Mature: 27746

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTEAPIWPAELFEDLDRNGPIPLYFQVAQRLEDGIRSGVLPPGARLENEISVAKHLNVS
CCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
RPTVRRAIQEVVDKGLLVRRRGVGTQVVQSHVTRPVELTSFFNDLKNANLDPKTRVLEHR
CHHHHHHHHHHHHCCCEEHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
LLAASSAIAEKLGVSAGDEVLLIRRLRSTGDIPVAILENYLPPAFNDVSLDELEKGGLYD
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHCCCHHH
ALRSRGVVLKIANQKIGARRAVGEESTLLDIEDGGPLLTVERVALDNSGQVIELGSHCYR
HHHCCCEEEEECCCCCCHHHHCCCCCCEEEECCCCCEEEEEEEEECCCCCEEEECCCCCC
PDMYNFETTLVAR
CCCCCCCEEEEEC
>Mature Secondary Structure 
TTEAPIWPAELFEDLDRNGPIPLYFQVAQRLEDGIRSGVLPPGARLENEISVAKHLNVS
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
RPTVRRAIQEVVDKGLLVRRRGVGTQVVQSHVTRPVELTSFFNDLKNANLDPKTRVLEHR
CHHHHHHHHHHHHCCCEEHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
LLAASSAIAEKLGVSAGDEVLLIRRLRSTGDIPVAILENYLPPAFNDVSLDELEKGGLYD
HHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHCCCHHH
ALRSRGVVLKIANQKIGARRAVGEESTLLDIEDGGPLLTVERVALDNSGQVIELGSHCYR
HHHCCCEEEEECCCCCCHHHHCCCCCCEEEECCCCCEEEEEEEEECCCCCEEEECCCCCC
PDMYNFETTLVAR
CCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]