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The map label for this gene is pal [H]

Identifier: 62185545

GI number: 62185545

Start: 1106924

End: 1107499

Strand: Direct

Name: pal [H]

Synonym: CAB945

Alternate gene names: 62185545

Gene position: 1106924-1107499 (Clockwise)

Preceding gene: 62185544

Following gene: 62185546

Centisome position: 96.73

GC content: 41.32

Gene sequence:

>576_bases
ATGAAAAAGAAATACCTAAGCGTTTTGAGTTGTTTACTACTTGCTCTTTTCGCCCTACCTTCATGCTCTTATCCTTGTGG
TGATTGGGATACTGTATGCGAGGATTGTCAGCATCCTAGAAGAAGAAAACAAAATTTCGCTTTTGTTCCTCTCTACACTG
ATGAAGAAATGAATCAACACTTTGCCGATATCTATGATTCCAAAGAAGAACAATTGTATAAAACAAGCAGTCAGTCAGTT
ACTTTCCGTAATATTACTTTCGCCACGGACAGCTACACGATCAAAGGTGAAGAAAACTTAGCTATTTTATCTAGTCTTGT
TCGTCAAATGCAGAAGTCTCCGAAAGCAACACTGTATATAGAGGGTCATACTGATGAGCGTGGAGCTGCAGCTTATAACC
TAGCCTTGGGAGCCCGCCGCGCCAATGCCGTTAAGCAGCACTTGATTAAACAGGGAATTTCAGCAGACCGGTTATTCACC
GTATCTTATGGAAAAGAACAGCCGATAAACTCTGGCCATAATGAGCTTGCTTGGCAACAAAACCGTCGTACAGAATTTAA
AATCCATGCACGTTAG

Upstream 100 bases:

>100_bases
AGTCTGATTACCCAAAAAACTAAGAAAATTGTTATAGGATTAGGGGAAAAACGTTTTCCTTCTTGGGGAGGTTTCCCTGA
TAACCAATAAAGAGAATCTT

Downstream 100 bases:

>100_bases
TTATAAACATTTTTTCTATTATGGATTCTGGTGCTGCTTAGGCGTTGCTTTGCCTGCACAAGCTGCGGGGAAGCCTCCTG
CCATGCAAACCGTACTTGCA

Product: putative peptidoglycan-associated protein (periplasmic)

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKKKYLSVLSCLLLALFALPSCSYPCGDWDTVCEDCQHPRRRKQNFAFVPLYTDEEMNQHFADIYDSKEEQLYKTSSQSV
TFRNITFATDSYTIKGEENLAILSSLVRQMQKSPKATLYIEGHTDERGAAAYNLALGARRANAVKQHLIKQGISADRLFT
VSYGKEQPINSGHNELAWQQNRRTEFKIHAR

Sequences:

>Translated_191_residues
MKKKYLSVLSCLLLALFALPSCSYPCGDWDTVCEDCQHPRRRKQNFAFVPLYTDEEMNQHFADIYDSKEEQLYKTSSQSV
TFRNITFATDSYTIKGEENLAILSSLVRQMQKSPKATLYIEGHTDERGAAAYNLALGARRANAVKQHLIKQGISADRLFT
VSYGKEQPINSGHNELAWQQNRRTEFKIHAR
>Mature_191_residues
MKKKYLSVLSCLLLALFALPSCSYPCGDWDTVCEDCQHPRRRKQNFAFVPLYTDEEMNQHFADIYDSKEEQLYKTSSQSV
TFRNITFATDSYTIKGEENLAILSSLVRQMQKSPKATLYIEGHTDERGAAAYNLALGARRANAVKQHLIKQGISADRLFT
VSYGKEQPINSGHNELAWQQNRRTEFKIHAR

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=100, Percent_Identity=43, Blast_Score=88, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21874; Mature: 21874

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKYLSVLSCLLLALFALPSCSYPCGDWDTVCEDCQHPRRRKQNFAFVPLYTDEEMNQH
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHCCEEEEEEECCHHHHHH
FADIYDSKEEQLYKTSSQSVTFRNITFATDSYTIKGEENLAILSSLVRQMQKSPKATLYI
HHHHHCCHHHHHHHCCCCCEEEEEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCEEEEE
EGHTDERGAAAYNLALGARRANAVKQHLIKQGISADRLFTVSYGKEQPINSGHNELAWQQ
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHECC
NRRTEFKIHAR
CCCCEEEEECC
>Mature Secondary Structure
MKKKYLSVLSCLLLALFALPSCSYPCGDWDTVCEDCQHPRRRKQNFAFVPLYTDEEMNQH
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHCCEEEEEEECCHHHHHH
FADIYDSKEEQLYKTSSQSVTFRNITFATDSYTIKGEENLAILSSLVRQMQKSPKATLYI
HHHHHCCHHHHHHHCCCCCEEEEEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCEEEEE
EGHTDERGAAAYNLALGARRANAVKQHLIKQGISADRLFTVSYGKEQPINSGHNELAWQQ
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHECC
NRRTEFKIHAR
CCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800 [H]