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The map label for this gene is 62185431

Identifier: 62185431

GI number: 62185431

Start: 956616

End: 957044

Strand: Direct

Name: 62185431

Synonym: CAB828

Alternate gene names: NA

Gene position: 956616-957044 (Clockwise)

Preceding gene: 62185430

Following gene: 62185439

Centisome position: 83.59

GC content: 42.19

Gene sequence:

>429_bases
ATGGAAGAGTTTGTAGCATATATCGTAAAGAATTTAGTTGCTGATCCTGAAGCTGTGGAAATTCGTTCTATTCAGGATGA
GTCAGGTGAATCTATAAAGTTAGAGATACGTGTGGCTCCCGATGATATAGGGAAGATCATAGGTAGACGGGGAAATACAA
TACACGCATTAAGAACTATTCTTAGACGTGTGTGCGCGAGATTAAAAAAGAAGATACAAATTGACTTGATCCAGCCCGAG
GGGATCAGAGAATCTGTTGACGAAAGTGAGGGTGTTTCCGGTAATTTCTGTCTGGATTCAAACAACTCTAGCGAGTCAGA
GATGGCCCATCAATGTTGTGGCCGAGGCAATTGCTGTTCAGCCGATGACGAAGATACAGAAGCATCTTCGGTTCATCACG
AATGCAGTCATAATCACCATTCTGAATAA

Upstream 100 bases:

>100_bases
TTGACGTTTTTTCGAAATTCGGTATAATCTTTTCAGGAACTTTGAATGATGCATAAGTGCTTTATTCTTTTTTTCCACAT
CTCAATTTAATTTGGATTTT

Downstream 100 bases:

>100_bases
TATTCACTACTTTTCTTCTTAATAAATAGAGTTTGGCAATAGCTAAAGACCCCTTTTCGGAGTTTTTAGCTCTTCGCAGT
TACTAGACACTGCTTATTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MEEFVAYIVKNLVADPEAVEIRSIQDESGESIKLEIRVAPDDIGKIIGRRGNTIHALRTILRRVCARLKKKIQIDLIQPE
GIRESVDESEGVSGNFCLDSNNSSESEMAHQCCGRGNCCSADDEDTEASSVHHECSHNHHSE

Sequences:

>Translated_142_residues
MEEFVAYIVKNLVADPEAVEIRSIQDESGESIKLEIRVAPDDIGKIIGRRGNTIHALRTILRRVCARLKKKIQIDLIQPE
GIRESVDESEGVSGNFCLDSNNSSESEMAHQCCGRGNCCSADDEDTEASSVHHECSHNHHSE
>Mature_142_residues
MEEFVAYIVKNLVADPEAVEIRSIQDESGESIKLEIRVAPDDIGKIIGRRGNTIHALRTILRRVCARLKKKIQIDLIQPE
GIRESVDESEGVSGNFCLDSNNSSESEMAHQCCGRGNCCSADDEDTEASSVHHECSHNHHSE

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR018111
- InterPro:   IPR020627 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 15731; Mature: 15731

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEFVAYIVKNLVADPEAVEIRSIQDESGESIKLEIRVAPDDIGKIIGRRGNTIHALRTI
CHHHHHHHHHHHHCCCCCEEHCCCCCCCCCEEEEEEEECCHHHHHHHCCCCCCHHHHHHH
LRRVCARLKKKIQIDLIQPEGIRESVDESEGVSGNFCLDSNNSSESEMAHQCCGRGNCCS
HHHHHHHHHHHHEEEEECCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCC
ADDEDTEASSVHHECSHNHHSE
CCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEEFVAYIVKNLVADPEAVEIRSIQDESGESIKLEIRVAPDDIGKIIGRRGNTIHALRTI
CHHHHHHHHHHHHCCCCCEEHCCCCCCCCCEEEEEEEECCHHHHHHHCCCCCCHHHHHHH
LRRVCARLKKKIQIDLIQPEGIRESVDESEGVSGNFCLDSNNSSESEMAHQCCGRGNCCS
HHHHHHHHHHHHEEEEECCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCC
ADDEDTEASSVHHECSHNHHSE
CCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935 [H]