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The map label for this gene is rnpA

Identifier: 62185409

GI number: 62185409

Start: 933208

End: 933627

Strand: Direct

Name: rnpA

Synonym: CAB804

Alternate gene names: 62185409

Gene position: 933208-933627 (Clockwise)

Preceding gene: 62185406

Following gene: 62185411

Centisome position: 81.55

GC content: 40.24

Gene sequence:

>420_bases
GTGTATCGATCAACTTTACCCAAGCGCGCTCGTGTATTAAAGAGACGGCAATTTCTTTATATATCACGAGCAGGATCTCG
CTGCCAAGGTAGTCAGGTGATTTTTCATGTTGCTCCATCTAAATATCCTGGATGTTGCAAGCTGGGCATAACTGTGTCCA
AAAAGTTTGGGAAAGCGAATAAAAGAAATTATTTTAAACGTATTGTGCGCGAGGCCTTTCGTTTAAAGCGTCACTCTCTT
CCTTCTTGTCAAATTGTTGTCATGCCCAAAAACAAACACCGACCTAAATTTGAAGAGTTGCTTCAAGATTTTACTCAACA
AATTCCAGAAGCACTCAACAGCAAATTCTCGAAAAATAAGTCTACGATTGGTGGCGAATATAGTCCAAAGAATGAGCAAT
GTGAGAGCGAACTTCCTTAG

Upstream 100 bases:

>100_bases
TTCCGTGCTCGTATGGCTACAAAAAACGGAAGAAACTTACTGAATCGCCGTCGTCGTCATGGCAGACACAATCTAATCGA
CCTATAAAATATTTTGTTTT

Downstream 100 bases:

>100_bases
GAGCTGTTTCGAAAGCAACTTCAGCGTGTTGTAAAGCACTTTTCCATTGATCCGAGTCTAGGTAAAACTGAGCTATCATC
ATCTCGATTCTCCAGACATT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MYRSTLPKRARVLKRRQFLYISRAGSRCQGSQVIFHVAPSKYPGCCKLGITVSKKFGKANKRNYFKRIVREAFRLKRHSL
PSCQIVVMPKNKHRPKFEELLQDFTQQIPEALNSKFSKNKSTIGGEYSPKNEQCESELP

Sequences:

>Translated_139_residues
MYRSTLPKRARVLKRRQFLYISRAGSRCQGSQVIFHVAPSKYPGCCKLGITVSKKFGKANKRNYFKRIVREAFRLKRHSL
PSCQIVVMPKNKHRPKFEELLQDFTQQIPEALNSKFSKNKSTIGGEYSPKNEQCESELP
>Mature_139_residues
MYRSTLPKRARVLKRRQFLYISRAGSRCQGSQVIFHVAPSKYPGCCKLGITVSKKFGKANKRNYFKRIVREAFRLKRHSL
PSCQIVVMPKNKHRPKFEELLQDFTQQIPEALNSKFSKNKSTIGGEYSPKNEQCESELP

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_CHLAB (Q5L548)

Other databases:

- EMBL:   CR848038
- RefSeq:   YP_220194.1
- HSSP:   Q9X1H4
- ProteinModelPortal:   Q5L548
- SMR:   Q5L548
- GeneID:   3337327
- GenomeReviews:   CR848038_GR
- KEGG:   cab:CAB804
- HOGENOM:   HBG728160
- OMA:   QFLYISR
- ProtClustDB:   PRK00730
- BioCyc:   CABO218497:CAB804-MONOMER
- BRENDA:   3.1.26.5
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 16122; Mature: 16122

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRSTLPKRARVLKRRQFLYISRAGSRCQGSQVIFHVAPSKYPGCCKLGITVSKKFGKAN
CCCCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCEEEECCCHHHHHCCCH
KRNYFKRIVREAFRLKRHSLPSCQIVVMPKNKHRPKFEELLQDFTQQIPEALNSKFSKNK
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
STIGGEYSPKNEQCESELP
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYRSTLPKRARVLKRRQFLYISRAGSRCQGSQVIFHVAPSKYPGCCKLGITVSKKFGKAN
CCCCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCCCEEEECCCHHHHHCCCH
KRNYFKRIVREAFRLKRHSLPSCQIVVMPKNKHRPKFEELLQDFTQQIPEALNSKFSKNK
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
STIGGEYSPKNEQCESELP
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA