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The map label for this gene is rng [H]

Identifier: 62185385

GI number: 62185385

Start: 906201

End: 907733

Strand: Direct

Name: rng [H]

Synonym: CAB780

Alternate gene names: 62185385

Gene position: 906201-907733 (Clockwise)

Preceding gene: 62185380

Following gene: 62185386

Centisome position: 79.19

GC content: 38.23

Gene sequence:

>1533_bases
ATGGAAAACGACATCTTATTAAATATAGAGTCCAAAGAAATTCGCTACGCTCATTTAAAAAACGGCCAGCTTTTTGACCT
CATCATTGAAAGAAAAAAAATTCGCCAGCTCAAGGGCAACATCTATCGGGGTCGCGTAACTAATATCTTAAGAAACATTC
AATCCGCATTCATCAATATTGATGAAAGAGAAAACGGCTTCATTCACATTTCCGACGTATTGGAGAACTCTAAGAAGTTT
GAACAAATGTTTGATATGGATTTCGATGTTCTCCACCAAGAAAACAATGAAAAGCCAGAAGCTCCTATAGAAGAGTTATT
GAAATTAGACAGTCCTGTACTCGTTCAAGTAGTGAAAGAACCTATAGGCACTAAAGGGGCACGTCTCACCTCTAACATTT
CTATTCCTGGACGTTATTTAGTTTTACTTCCTAACTCCCCTCATCGTGGTGTATCTAGAAAAATAGAAGATCCGCATATG
AGGGATCAATTGAAACAGCTCATCCGCTCCTTTGAAATGCCTCAGGATATGGGTTTAATTTGTCGAACGGCGAGTGTCCT
CGCTTCTACAGATGCGTTAATCAATGAGGCTCACGACTTACTTGCAACATGGAAGGGTATCCTGGAGAAATTCCATTCTA
CCGATCAGCCCTGTCTACTTTATGAAGAGACTGATATCTTAAAAAAGGCTGTTATCACCTGTATAGATAAGAATTATAAA
CGCTTATTGATAGATGATTACTCTACCTATCAAAAATGTAAGCGTATGCTCAAAAAATATTCCCCTAATTCTTCTGTAAA
GATTGAATACTATCGTGATTCTATCCCTATGTTCGAACGTTTTAACATTGAAAAAGAGATAGATAAAGCAACGAAAAGGA
AAATCTGGCTTTCAAGCGGTGGTTATCTATTTTTCGATAAAACAGAAGCGATGCATACAATTGACGTTAACTCAGGTAGA
AGCACGCAATTAGAAAGTGGTGTTGAAGAAACTCTGGTACAAATCAATCTAGAGGCTGCTGAGGAAATTGCTAGACAACT
CCGCTTACGTAATGTTGGGGGCTTAGTCATTATTGATTTCATAGATATGAAGTCACGGAAAAACCAACGTCGTGTTTTAG
AACGCTTAAAAGAACATATGAAATACGATGCTGCTCGCTGTACGATTTTAAGTATGAGTGAATTTGGTCTTGTTGAGATG
ACCCGTCAGAGAAATCGCGAATCTTTAATGCAGACACTGTTCACTACGTGTCCTTACTGTAGTGGGAATGCGATTATCAA
AACCCCGGAAAGCGTGGTGATTGAAATTGAACGCGATCTCAAAAAAGTCATCAATCATAAGGAGCACACCCACCTGTGTT
TAGTTGTGCATCCTGAAATTGCCAGTTTTATGAAACAAGAACAAGATGATGATGAACTCATCCGATTGGCTAAACATTTA
AAAGCGAAATTACAAATCAATACCTCAGACTCGCTTCACCTCAATCACTACCAATTCTTTTCATTAGTTACAGGAGAGAG
TATTGAATTATAG

Upstream 100 bases:

>100_bases
TATCTAGGAAGTTTAAGACTACGCCTCTACAAACAAACCTATTCCTGAATTATGTCCCAGAAAAAAGCAGGGAAATACGG
ATTAGGCATCAAGGAAGACC

Downstream 100 bases:

>100_bases
GCATGGTTATGCATTTTTCTACCTATTTACTAGAAGCCTTTGGCAACCAATCCTTACCTGAGTCCTTGTATCAGAAGTTT
CAGATTTATCATCAAAACTA

Product: putative ribonuclease

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINIDERENGFIHISDVLENSKKF
EQMFDMDFDVLHQENNEKPEAPIEELLKLDSPVLVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRGVSRKIEDPHM
RDQLKQLIRSFEMPQDMGLICRTASVLASTDALINEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVITCIDKNYK
RLLIDDYSTYQKCKRMLKKYSPNSSVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSSGGYLFFDKTEAMHTIDVNSGR
STQLESGVEETLVQINLEAAEEIARQLRLRNVGGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEM
TRQRNRESLMQTLFTTCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHTHLCLVVHPEIASFMKQEQDDDELIRLAKHL
KAKLQINTSDSLHLNHYQFFSLVTGESIEL

Sequences:

>Translated_510_residues
MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINIDERENGFIHISDVLENSKKF
EQMFDMDFDVLHQENNEKPEAPIEELLKLDSPVLVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRGVSRKIEDPHM
RDQLKQLIRSFEMPQDMGLICRTASVLASTDALINEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVITCIDKNYK
RLLIDDYSTYQKCKRMLKKYSPNSSVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSSGGYLFFDKTEAMHTIDVNSGR
STQLESGVEETLVQINLEAAEEIARQLRLRNVGGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEM
TRQRNRESLMQTLFTTCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHTHLCLVVHPEIASFMKQEQDDDELIRLAKHL
KAKLQINTSDSLHLNHYQFFSLVTGESIEL
>Mature_510_residues
MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINIDERENGFIHISDVLENSKKF
EQMFDMDFDVLHQENNEKPEAPIEELLKLDSPVLVQVVKEPIGTKGARLTSNISIPGRYLVLLPNSPHRGVSRKIEDPHM
RDQLKQLIRSFEMPQDMGLICRTASVLASTDALINEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVITCIDKNYK
RLLIDDYSTYQKCKRMLKKYSPNSSVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSSGGYLFFDKTEAMHTIDVNSGR
STQLESGVEETLVQINLEAAEEIARQLRLRNVGGLVIIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEM
TRQRNRESLMQTLFTTCPYCSGNAIIKTPESVVIEIERDLKKVINHKEHTHLCLVVHPEIASFMKQEQDDDELIRLAKHL
KAKLQINTSDSLHLNHYQFFSLVTGESIEL

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=468, Percent_Identity=35.6837606837607, Blast_Score=290, Evalue=1e-79,
Organism=Escherichia coli, GI1787325, Length=505, Percent_Identity=34.4554455445545, Blast_Score=287, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 59196; Mature: 59196

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINI
CCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEC
DERENGFIHISDVLENSKKFEQMFDMDFDVLHQENNEKPEAPIEELLKLDSPVLVQVVKE
CCCCCCEEEEHHHHCCHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHH
PIGTKGARLTSNISIPGRYLVLLPNSPHRGVSRKIEDPHMRDQLKQLIRSFEMPQDMGLI
CCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH
CRTASVLASTDALINEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVITCIDKNYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCC
RLLIDDYSTYQKCKRMLKKYSPNSSVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSSG
EEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCHHHHHHHHHCEEEEECC
GYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNVGGLVIIDF
CEEEEECCCCEEEEECCCCCCCHHHCCHHHHHHHEEHHHHHHHHHHHHHHCCCCEEEEEE
IDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCPYC
ECCCCCCHHHHHHHHHHHHHHHCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
SGNAIIKTPESVVIEIERDLKKVINHKEHTHLCLVVHPEIASFMKQEQDDDELIRLAKHL
CCCEEEECCCHHEEEEHHHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHH
KAKLQINTSDSLHLNHYQFFSLVTGESIEL
HHEEEECCCCCEEECCEEEEEEECCCCCCC
>Mature Secondary Structure
MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINI
CCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEC
DERENGFIHISDVLENSKKFEQMFDMDFDVLHQENNEKPEAPIEELLKLDSPVLVQVVKE
CCCCCCEEEEHHHHCCHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHH
PIGTKGARLTSNISIPGRYLVLLPNSPHRGVSRKIEDPHMRDQLKQLIRSFEMPQDMGLI
CCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH
CRTASVLASTDALINEAHDLLATWKGILEKFHSTDQPCLLYEETDILKKAVITCIDKNYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCC
RLLIDDYSTYQKCKRMLKKYSPNSSVKIEYYRDSIPMFERFNIEKEIDKATKRKIWLSSG
EEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHCCCHHHHHHHHHCEEEEECC
GYLFFDKTEAMHTIDVNSGRSTQLESGVEETLVQINLEAAEEIARQLRLRNVGGLVIIDF
CEEEEECCCCEEEEECCCCCCCHHHCCHHHHHHHEEHHHHHHHHHHHHHHCCCCEEEEEE
IDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCPYC
ECCCCCCHHHHHHHHHHHHHHHCHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCC
SGNAIIKTPESVVIEIERDLKKVINHKEHTHLCLVVHPEIASFMKQEQDDDELIRLAKHL
CCCEEEECCCHHEEEEHHHHHHHHCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHH
KAKLQINTSDSLHLNHYQFFSLVTGESIEL
HHEEEECCCCCEEECCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]