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The map label for this gene is ymfK [H]

Identifier: 59712644

GI number: 59712644

Start: 2266340

End: 2266987

Strand: Direct

Name: ymfK [H]

Synonym: VF_2037

Alternate gene names: 59712644

Gene position: 2266340-2266987 (Clockwise)

Preceding gene: 59712622

Following gene: 172087748

Centisome position: 78.22

GC content: 41.98

Gene sequence:

>648_bases
ATGGATACATTCGGTTCAAGACTTTTCCACTTAAGAAAAGCAAGAAAACTCACCCAATCAAGCATTGCCAAGGCATCTGG
CGTATCACGTTCATCCGTAACACTATGGGAACAAGATACAAATAAACCGAAAGGCGAAAGTTTGATGGCATTGGCTAGTT
TTCTTAAATGTGATGTGAATTGGCTTTTAACAGGCCAAGGATCTCCCGAACCTGCAAAACAAGAACAAGAAACAACGGTG
GTTTCTGTGGCATTAAAACCACAAGGCTCTTATCCGGTTATTTCTTGGGTTCAGGCGGGTGGATGGAACGACATTCATTT
AACCGATTTGCACGATGCGGATTATTATCCGTGCCCGGTGCGCTGCAGTAAAAATACGTTTCTGTTAAAAGTGGTTGGTA
AAAGCATGAACCCTGTTTTTAGAGAAGGGGAATTGATTTTTGTTGATCCTGATGTAGAAGCTGTTAATGGCAAGTATGTG
GTTGCGCGTTTAGATGACGAGAACCAAGCCACATTCAAGCAGCTTATCATTGAAGATGGTAAGAAGTTTTTACAAGCCGC
CAACCCTGACTGGCCAACCCCGATCATTCCTATTAATGGAAATTGCACAATTGTGGGTGTGGTTATCTCTTCAATGAAAT
TGTTTTAG

Upstream 100 bases:

>100_bases
GTTAGTTAAATCACTTTAACTGGTGAGTTAACTCACGTCAATAAAAAAATCACCTTAACTGGTCGGCAAACTCACCCGAT
AAAGATGTAAGATAACTAAC

Downstream 100 bases:

>100_bases
TGTATTGAAATCAAAAACGTTATGAGGTTCACCAATGGAACATGTAACTCAATTAACAAAAAAACACCTCGAAGATTTTT
TTGACGATAAACTTCAAGAT

Product: Cro/Cl family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MDTFGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMALASFLKCDVNWLLTGQGSPEPAKQEQETTV
VSVALKPQGSYPVISWVQAGGWNDIHLTDLHDADYYPCPVRCSKNTFLLKVVGKSMNPVFREGELIFVDPDVEAVNGKYV
VARLDDENQATFKQLIIEDGKKFLQAANPDWPTPIIPINGNCTIVGVVISSMKLF

Sequences:

>Translated_215_residues
MDTFGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMALASFLKCDVNWLLTGQGSPEPAKQEQETTV
VSVALKPQGSYPVISWVQAGGWNDIHLTDLHDADYYPCPVRCSKNTFLLKVVGKSMNPVFREGELIFVDPDVEAVNGKYV
VARLDDENQATFKQLIIEDGKKFLQAANPDWPTPIIPINGNCTIVGVVISSMKLF
>Mature_215_residues
MDTFGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMALASFLKCDVNWLLTGQGSPEPAKQEQETTV
VSVALKPQGSYPVISWVQAGGWNDIHLTDLHDADYYPCPVRCSKNTFLLKVVGKSMNPVFREGELIFVDPDVEAVNGKYV
VARLDDENQATFKQLIIEDGKKFLQAANPDWPTPIIPINGNCTIVGVVISSMKLF

Specific function: Unknown

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787391, Length=148, Percent_Identity=46.6216216216216, Blast_Score=137, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 23756; Mature: 23756

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTFGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMALASFLKCDVN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCE
WLLTGQGSPEPAKQEQETTVVSVALKPQGSYPVISWVQAGGWNDIHLTDLHDADYYPCPV
EEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCC
RCSKNTFLLKVVGKSMNPVFREGELIFVDPDVEAVNGKYVVARLDDENQATFKQLIIEDG
EECCCEEEEEEECCCCCCCCCCCCEEEECCCCEEECCEEEEEEECCCCHHHHHHHHHHHH
KKFLQAANPDWPTPIIPINGNCTIVGVVISSMKLF
HHHHHHCCCCCCCCEEEECCCEEEEEEEEHHHCCC
>Mature Secondary Structure
MDTFGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMALASFLKCDVN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCE
WLLTGQGSPEPAKQEQETTVVSVALKPQGSYPVISWVQAGGWNDIHLTDLHDADYYPCPV
EEEECCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCC
RCSKNTFLLKVVGKSMNPVFREGELIFVDPDVEAVNGKYVVARLDDENQATFKQLIIEDG
EECCCEEEEEEECCCCCCCCCCCCEEEECCCCEEECCEEEEEEECCCCHHHHHHHHHHHH
KKFLQAANPDWPTPIIPINGNCTIVGVVISSMKLF
HHHHHHCCCCCCCCEEEECCCEEEEEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]