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The map label for this gene is yfgC [C]

Identifier: 59712529

GI number: 59712529

Start: 2151175

End: 2152629

Strand: Direct

Name: yfgC [C]

Synonym: VF_1922

Alternate gene names: 59712529

Gene position: 2151175-2152629 (Clockwise)

Preceding gene: 59712527

Following gene: 59712530

Centisome position: 74.24

GC content: 39.66

Gene sequence:

>1455_bases
ATGTTCAAACTAAAAAAACTGGCCAATGGGTTACTTATTGCATCATTACTAACAAGCTCAATTCCGAGTTTTGCAAAAAA
TGATTTAAATTTACCTGATATTGGTACAACAGCGGCTTCCACCTTAACCATAGATCAAGAGTTAATTTATGGTGATGCTT
ATATGCGTATGCTACGAGCAAGCCAACCTGTTATTAATGATCCAGTTTTAGCTGAATATGTACAAGACTTAGGACATCGA
TTAGTTGCTAATGCCAATGATGTCAAAACGCCTTTTCACTTCTTTTTAATTAATAACAGAGAGATTAATGCATTTGCCTT
CTTTGGTGGTTATGTCGCTCTTCATTCAGGGTTATTTTTGCATGCCCAAACAGAAAGTGAATTAGCTTCTGTTGTTGCTC
ACGAAATTGCACACATTACTCAACGCCACTTAGCTCGTAGTATGGAAGAACAAGCTCGTCGCTCTCCAGCCACAGTCGCT
GCTTTAGTTGGTTCATTATTACTTGCTATTGCTGCACCAGAAGCAGGGATTGCAGCTATTCACGCCACTACAGCAGGAGC
GATGCAAAGCTCAATAAACTATACTCGAAGCAACGAAAAAGAAGCTGACCGATTTGGTATTGATACGCTTGCAAAATCAG
GGTTTGACGTCTCTGCTATGCCTCGATTTTTTTCTCGTTTAGCAGACCAATATCGCTACGCAAGTACACCACCAGCAATG
CTATTAACTCACCCATTACCAACATCTCGTATTACCGATAGTCGAGAACGAGCACAGCAATATCCAATGAGACGAGTTGA
TACCTCATTACGTTACCATCTTGCACGTTCACGTATTGTTGCTCGATTTGCAGGTATTGATAGCAGTGCGGCCTTGGATT
GGTTCGCTCGAAAATCCAAAACACACAATACCGACATAAAACAAGCATTAGAATATGGAAAAGTCTTGGTTTACATCGAT
TCAAAACAATACGACAAAGCGCAGCCATTAATAAATAAATTACTAAAAAATGATCCTTTAAATACGTTTTATATAGACGC
GGCAACAGACTTAGATCTGTATACGAAGAAAAATGAACAAGCTCTAAAACGTTTAAAAGATGGGTTGGTACAACTTCCTA
ATAATCCAGTACTAACTATTAATTATGCACATGCATTAACAGAATCTAATAAACCTTCTGAAGCGGTGCGTGTATTACAA
CGCTATACACATGACCACCCAGATGACCCCACTGGATGGCAACTCCTTGCTAAGGCTTATCATGACAATGGTAGCTCTGA
TGGGGAACTCGCAGCTCGTGCTGAAGTATACGCTTTAAAAGGCATGTGGAACAAAGCATTAAATAATTATACTCAAGCTA
GCCAACTGGTTGAGTATGGTAGTTTAGATCAAGCTAGATACGACGCAAGAATCGATCAGCTTCGTTTATCAAGAGAGCGT
TTTAGCGCCTTATAA

Upstream 100 bases:

>100_bases
CAAAAAAGAAACCTATTTTAATTTTGATACTCTTATTCGACAGGTTTACGTTATCATCAATTAATAGCAAAGTGTTATTA
AAAGGATTTGTTAAAAATAC

Downstream 100 bases:

>100_bases
TAGAAAGGAAAGTATATGTCTGTTGTTATTTATCATAACCCTCGTTGCTCAAAAAGCCGCGAAACCTTATCTCTTCTAGA
AGAAAAAGGGATCACGCCAA

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MFKLKKLANGLLIASLLTSSIPSFAKNDLNLPDIGTTAASTLTIDQELIYGDAYMRMLRASQPVINDPVLAEYVQDLGHR
LVANANDVKTPFHFFLINNREINAFAFFGGYVALHSGLFLHAQTESELASVVAHEIAHITQRHLARSMEEQARRSPATVA
ALVGSLLLAIAAPEAGIAAIHATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVSAMPRFFSRLADQYRYASTPPAM
LLTHPLPTSRITDSRERAQQYPMRRVDTSLRYHLARSRIVARFAGIDSSAALDWFARKSKTHNTDIKQALEYGKVLVYID
SKQYDKAQPLINKLLKNDPLNTFYIDAATDLDLYTKKNEQALKRLKDGLVQLPNNPVLTINYAHALTESNKPSEAVRVLQ
RYTHDHPDDPTGWQLLAKAYHDNGSSDGELAARAEVYALKGMWNKALNNYTQASQLVEYGSLDQARYDARIDQLRLSRER
FSAL

Sequences:

>Translated_484_residues
MFKLKKLANGLLIASLLTSSIPSFAKNDLNLPDIGTTAASTLTIDQELIYGDAYMRMLRASQPVINDPVLAEYVQDLGHR
LVANANDVKTPFHFFLINNREINAFAFFGGYVALHSGLFLHAQTESELASVVAHEIAHITQRHLARSMEEQARRSPATVA
ALVGSLLLAIAAPEAGIAAIHATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVSAMPRFFSRLADQYRYASTPPAM
LLTHPLPTSRITDSRERAQQYPMRRVDTSLRYHLARSRIVARFAGIDSSAALDWFARKSKTHNTDIKQALEYGKVLVYID
SKQYDKAQPLINKLLKNDPLNTFYIDAATDLDLYTKKNEQALKRLKDGLVQLPNNPVLTINYAHALTESNKPSEAVRVLQ
RYTHDHPDDPTGWQLLAKAYHDNGSSDGELAARAEVYALKGMWNKALNNYTQASQLVEYGSLDQARYDARIDQLRLSRER
FSAL
>Mature_484_residues
MFKLKKLANGLLIASLLTSSIPSFAKNDLNLPDIGTTAASTLTIDQELIYGDAYMRMLRASQPVINDPVLAEYVQDLGHR
LVANANDVKTPFHFFLINNREINAFAFFGGYVALHSGLFLHAQTESELASVVAHEIAHITQRHLARSMEEQARRSPATVA
ALVGSLLLAIAAPEAGIAAIHATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVSAMPRFFSRLADQYRYASTPPAM
LLTHPLPTSRITDSRERAQQYPMRRVDTSLRYHLARSRIVARFAGIDSSAALDWFARKSKTHNTDIKQALEYGKVLVYID
SKQYDKAQPLINKLLKNDPLNTFYIDAATDLDLYTKKNEQALKRLKDGLVQLPNNPVLTINYAHALTESNKPSEAVRVLQ
RYTHDHPDDPTGWQLLAKAYHDNGSSDGELAARAEVYALKGMWNKALNNYTQASQLVEYGSLDQARYDARIDQLRLSRER
FSAL

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=486, Percent_Identity=50, Blast_Score=451, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 53957; Mature: 53957

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLKKLANGLLIASLLTSSIPSFAKNDLNLPDIGTTAASTLTIDQELIYGDAYMRMLRA
CCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHEEEEHHHHHHHHHHHHHHHH
SQPVINDPVLAEYVQDLGHRLVANANDVKTPFHFFLINNREINAFAFFGGYVALHSGLFL
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEHHHHHHHHHCCEEE
HAQTESELASVVAHEIAHITQRHLARSMEEQARRSPATVAALVGSLLLAIAAPEAGIAAI
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEE
HATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVSAMPRFFSRLADQYRYASTPPAM
EHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCE
LLTHPLPTSRITDSRERAQQYPMRRVDTSLRYHLARSRIVARFAGIDSSAALDWFARKSK
EEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
THNTDIKQALEYGKVLVYIDSKQYDKAQPLINKLLKNDPLNTFYIDAATDLDLYTKKNEQ
CCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCHH
ALKRLKDGLVQLPNNPVLTINYAHALTESNKPSEAVRVLQRYTHDHPDDPTGWQLLAKAY
HHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
HDNGSSDGELAARAEVYALKGMWNKALNNYTQASQLVEYGSLDQARYDARIDQLRLSRER
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
FSAL
HHCC
>Mature Secondary Structure
MFKLKKLANGLLIASLLTSSIPSFAKNDLNLPDIGTTAASTLTIDQELIYGDAYMRMLRA
CCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHEEEEHHHHHHHHHHHHHHHH
SQPVINDPVLAEYVQDLGHRLVANANDVKTPFHFFLINNREINAFAFFGGYVALHSGLFL
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEHHHHHHHHHCCEEE
HAQTESELASVVAHEIAHITQRHLARSMEEQARRSPATVAALVGSLLLAIAAPEAGIAAI
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEE
HATTAGAMQSSINYTRSNEKEADRFGIDTLAKSGFDVSAMPRFFSRLADQYRYASTPPAM
EHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCE
LLTHPLPTSRITDSRERAQQYPMRRVDTSLRYHLARSRIVARFAGIDSSAALDWFARKSK
EEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
THNTDIKQALEYGKVLVYIDSKQYDKAQPLINKLLKNDPLNTFYIDAATDLDLYTKKNEQ
CCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCHH
ALKRLKDGLVQLPNNPVLTINYAHALTESNKPSEAVRVLQRYTHDHPDDPTGWQLLAKAY
HHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
HDNGSSDGELAARAEVYALKGMWNKALNNYTQASQLVEYGSLDQARYDARIDQLRLSRER
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
FSAL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]