| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is fur [H]
Identifier: 59711417
GI number: 59711417
Start: 890946
End: 891389
Strand: Reverse
Name: fur [H]
Synonym: VF_0810
Alternate gene names: 59711417
Gene position: 891389-890946 (Counterclockwise)
Preceding gene: 59711419
Following gene: 59711414
Centisome position: 30.76
GC content: 37.84
Gene sequence:
>444_bases ATGTCAGATAATAACCAAGCTCTAAAAAAAGCCGGTTTAAAAGTAACCCTTCCGCGCCTTAAAATTTTAGAAGTGCTACA AGAACCAGAGTGCCAACACATTAGCGCTGAAGATTTGTATAAAAAGCTGATTGATATCGGTGAAGAAATCGGACTTGCAA CTGTTTACCGTGTATTAAACCAATTTGATGATGCTGGTATCGTCACTCGCCACCATTTTGAAGGCGGTAAATCAGTTTTT GAATTAGCAACTCAACATCACCATGATCATTTAGTTTGCTTAGATTGTGGAAAAGTAATTGAGTTCTCGGATGAAACAAT TGAGCAACGTCAAAAACAAGTTGCAGAAAAGTACAATGTCCGTCTAACTAATCACAGTTTGTACCTATATGGTCACTGTA TAACGGGTGATTGTGCTGATAATGATGATGCACACAACGCTTAA
Upstream 100 bases:
>100_bases ATCTTGCATATAAGGTTTCAACTGAATTGAATGTTCCCTATAATTAAGTGATTAAAACTGCACAGGAAATCGATGCAGAA AGCCAAAACAGGAAAAGTCG
Downstream 100 bases:
>100_bases TTAATCGCTTTTTGCGACAAGCTCATATAAAAAAACCAGCATTTTCATGCTGGTTTTTTATTAGCTAGCAATGATTAATT AACCAGCCCAAGTATCACGT
Product: ferric uptake regulator
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MSDNNQALKKAGLKVTLPRLKILEVLQEPECQHISAEDLYKKLIDIGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVF ELATQHHHDHLVCLDCGKVIEFSDETIEQRQKQVAEKYNVRLTNHSLYLYGHCITGDCADNDDAHNA
Sequences:
>Translated_147_residues MSDNNQALKKAGLKVTLPRLKILEVLQEPECQHISAEDLYKKLIDIGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVF ELATQHHHDHLVCLDCGKVIEFSDETIEQRQKQVAEKYNVRLTNHSLYLYGHCITGDCADNDDAHNA >Mature_146_residues SDNNQALKKAGLKVTLPRLKILEVLQEPECQHISAEDLYKKLIDIGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFE LATQHHHDHLVCLDCGKVIEFSDETIEQRQKQVAEKYNVRLTNHSLYLYGHCITGDCADNDDAHNA
Specific function: Fur acts as a repressor, employing Fe(2+) as a cofactor to bind the operator of the iron transport operon [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=147, Percent_Identity=78.9115646258503, Blast_Score=249, Evalue=4e-68,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 - InterPro: IPR011991 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 16640; Mature: 16509
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDNNQALKKAGLKVTLPRLKILEVLQEPECQHISAEDLYKKLIDIGEEIGLATVYRVLN CCCCHHHHHHCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHCCHHHHHHHHH QFDDAGIVTRHHFEGGKSVFELATQHHHDHLVCLDCGKVIEFSDETIEQRQKQVAEKYNV HCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHCE RLTNHSLYLYGHCITGDCADNDDAHNA EEECCEEEEEEEEEECCCCCCCCCCCC >Mature Secondary Structure SDNNQALKKAGLKVTLPRLKILEVLQEPECQHISAEDLYKKLIDIGEEIGLATVYRVLN CCCHHHHHHCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHCCHHHHHHHHH QFDDAGIVTRHHFEGGKSVFELATQHHHDHLVCLDCGKVIEFSDETIEQRQKQVAEKYNV HCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHCE RLTNHSLYLYGHCITGDCADNDDAHNA EEECCEEEEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1372314 [H]