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The map label for this gene is ybeY [C]

Identifier: 59711364

GI number: 59711364

Start: 825827

End: 826288

Strand: Reverse

Name: ybeY [C]

Synonym: VF_0757

Alternate gene names: 59711364

Gene position: 826288-825827 (Counterclockwise)

Preceding gene: 59711365

Following gene: 59711363

Centisome position: 28.52

GC content: 37.66

Gene sequence:

>462_bases
ATGAGTATTGAACTCGATCTACAAATTGCATGTGAAAACGAAAACGGCTTACCATCAGAAAAAGAGCTGATGACATGGTT
AAATGCAGTTATTCCACAATTTCAACCGCAAGCCGAATTAACCATTCGTATTGTAGACGAAAAAGAAAGTCATGAATTAA
ATCACGAATATCGTGGTAAAGATAAGCCAACTAATGTACTTTCATTTCCGTTCGAAGCTCCTCCTGGTCTTGAGCTTAAT
TTACTTGGCGATTTAATTATCTGTCGCCAAGTTGTTGAAGAAGAAGCTATCGAGCAAAATAAGCCATTATTAGCACATTG
GGCTCATATGGTTGTACATGGCAGTCTTCATCTGCTAGGTTATGACCATATCGAAGATGATGAAGCTGAAGAGATGGAAT
CACTCGAAACAGAATTAATGCAAGGTATGGGATTTGAAGACCCATATATTGCTGAGAAATAA

Upstream 100 bases:

>100_bases
GATCAAAAAGAGCGTAAACTAGAGGAAATACGCAGAAAGCAAGAGCGTGATGCTCGCATGGCTGAAGCAGAAAATAATCA
GTAACAAAATCAGGTGAACA

Downstream 100 bases:

>100_bases
CAACGGAATAACCCGTAGTTACTAATGTGCGCTATCCACATTGATAGCATTTACTTTAAAAGAAGCCATGAACGACGAAA
ATTCACAGAATACAGAAGGT

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSIELDLQIACENENGLPSEKELMTWLNAVIPQFQPQAELTIRIVDEKESHELNHEYRGKDKPTNVLSFPFEAPPGLELN
LLGDLIICRQVVEEEAIEQNKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETELMQGMGFEDPYIAEK

Sequences:

>Translated_153_residues
MSIELDLQIACENENGLPSEKELMTWLNAVIPQFQPQAELTIRIVDEKESHELNHEYRGKDKPTNVLSFPFEAPPGLELN
LLGDLIICRQVVEEEAIEQNKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETELMQGMGFEDPYIAEK
>Mature_152_residues
SIELDLQIACENENGLPSEKELMTWLNAVIPQFQPQAELTIRIVDEKESHELNHEYRGKDKPTNVLSFPFEAPPGLELNL
LGDLIICRQVVEEEAIEQNKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETELMQGMGFEDPYIAEK

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=149, Percent_Identity=77.1812080536913, Blast_Score=228, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_VIBF1 (Q5E6U4)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_204140.1
- ProteinModelPortal:   Q5E6U4
- SMR:   Q5E6U4
- STRING:   Q5E6U4
- GeneID:   3277401
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_0757
- NMPDR:   fig|312309.3.peg.1258
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- PhylomeDB:   Q5E6U4
- ProtClustDB:   PRK00016
- BioCyc:   VFIS312309:VF0757-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17490; Mature: 17359

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIELDLQIACENENGLPSEKELMTWLNAVIPQFQPQAELTIRIVDEKESHELNHEYRGK
CCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHCCHHHCCC
DKPTNVLSFPFEAPPGLELNLLGDLIICRQVVEEEAIEQNKPLLAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEE
YDHIEDDEAEEMESLETELMQGMGFEDPYIAEK
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SIELDLQIACENENGLPSEKELMTWLNAVIPQFQPQAELTIRIVDEKESHELNHEYRGK
CEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHCCHHHCCC
DKPTNVLSFPFEAPPGLELNLLGDLIICRQVVEEEAIEQNKPLLAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEE
YDHIEDDEAEEMESLETELMQGMGFEDPYIAEK
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA