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The map label for this gene is rlpA [C]

Identifier: 59711353

GI number: 59711353

Start: 813501

End: 814310

Strand: Reverse

Name: rlpA [C]

Synonym: VF_0746

Alternate gene names: 59711353

Gene position: 814310-813501 (Counterclockwise)

Preceding gene: 59711354

Following gene: 59711352

Centisome position: 28.1

GC content: 37.28

Gene sequence:

>810_bases
ATGCGTGTTATTCTACTTGCAGTTTCTCTTATATTAGCGGGTTGTGCTTCTGAACCACCCCAAAAAACAACTGATGAACC
TAATGCTGGTCGTTATCAAATTGATAATGATATTGCTCCGGATATGCCAATTTCAGTTGAACATATCGAAGATGCTCACC
CTCGCTACGAGCCAAAAAGCTTATATGGCAACAAAGATTACACCTTATTAGGCAAAGATTACCCGATAGTGAAAGAACCC
AAAGGGTTCACTCAAGAAGGGATAAGTTCTTGGTATGGCAAAAAATTTCATGGCCATAAAACATCAAATGGCGAAGTTTA
TGATATGTATTCAATGAGTGCTGCTCATAAAACACTGCCGCTTCCAAGTTATGTAAAAGTAACTAACAAAGACAATGGAA
AAACAGCCATTGTTCGAGTTAATGATCGTGGACCTTTTCATGAAGGTCGGATCATAGACTTAAGTTTTGCAGCTGCCGCC
AAACTTGATGTACTTAAAACCGGTACAGCAAATGTTAAAATCGAATATATTTCTGTAGCTAAACCGACTAACCCGCAAGA
ATGGCACGCAATAGACCCTAATCAATATCATATTCAAATGGTCGCCGTTAAAAATGAACAAAGTGCGGATAAAATAGCAA
AGAAACTAGAAGCTCAATTTAATGCTCCAACAAACATTATAAAATCAGGCAATGTTTACCGTGTTCGTTTAGGGCCTTTT
ATTGATAGAGACAGAGCAGATAAAACATTGATCGAAGCAAAAAATGGACAATATACTTCAGCGTTTATCATCCAAGAATT
GAAGAAATAA

Upstream 100 bases:

>100_bases
TAGTTAGTTATGGAGGAACATCCATGGTTACCCTAATGGCAGGCTTTGGTATTTTAATGTCAATCCATACACATAGAAAA
GTTCACTCAAAGGCAAATTA

Downstream 100 bases:

>100_bases
TGATTTCAAAGATGACAATATCAACAGAAATGTCAATCTTTAGTAAATATTGTAAGTAAATATCCAGCATCTCTTATTGA
TGTAAATATTAATGAACTAA

Product: minor lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MRVILLAVSLILAGCASEPPQKTTDEPNAGRYQIDNDIAPDMPISVEHIEDAHPRYEPKSLYGNKDYTLLGKDYPIVKEP
KGFTQEGISSWYGKKFHGHKTSNGEVYDMYSMSAAHKTLPLPSYVKVTNKDNGKTAIVRVNDRGPFHEGRIIDLSFAAAA
KLDVLKTGTANVKIEYISVAKPTNPQEWHAIDPNQYHIQMVAVKNEQSADKIAKKLEAQFNAPTNIIKSGNVYRVRLGPF
IDRDRADKTLIEAKNGQYTSAFIIQELKK

Sequences:

>Translated_269_residues
MRVILLAVSLILAGCASEPPQKTTDEPNAGRYQIDNDIAPDMPISVEHIEDAHPRYEPKSLYGNKDYTLLGKDYPIVKEP
KGFTQEGISSWYGKKFHGHKTSNGEVYDMYSMSAAHKTLPLPSYVKVTNKDNGKTAIVRVNDRGPFHEGRIIDLSFAAAA
KLDVLKTGTANVKIEYISVAKPTNPQEWHAIDPNQYHIQMVAVKNEQSADKIAKKLEAQFNAPTNIIKSGNVYRVRLGPF
IDRDRADKTLIEAKNGQYTSAFIIQELKK
>Mature_269_residues
MRVILLAVSLILAGCASEPPQKTTDEPNAGRYQIDNDIAPDMPISVEHIEDAHPRYEPKSLYGNKDYTLLGKDYPIVKEP
KGFTQEGISSWYGKKFHGHKTSNGEVYDMYSMSAAHKTLPLPSYVKVTNKDNGKTAIVRVNDRGPFHEGRIIDLSFAAAA
KLDVLKTGTANVKIEYISVAKPTNPQEWHAIDPNQYHIQMVAVKNEQSADKIAKKLEAQFNAPTNIIKSGNVYRVRLGPF
IDRDRADKTLIEAKNGQYTSAFIIQELKK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=136, Percent_Identity=41.1764705882353, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 30057; Mature: 30057

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVILLAVSLILAGCASEPPQKTTDEPNAGRYQIDNDIAPDMPISVEHIEDAHPRYEPKS
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEHHHHCCCCCCCCCHH
LYGNKDYTLLGKDYPIVKEPKGFTQEGISSWYGKKFHGHKTSNGEVYDMYSMSAAHKTLP
HCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHCCC
LPSYVKVTNKDNGKTAIVRVNDRGPFHEGRIIDLSFAAAAKLDVLKTGTANVKIEYISVA
CCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEHHHHHEEEEEECCCCEEEEEEEEEE
KPTNPQEWHAIDPNQYHIQMVAVKNEQSADKIAKKLEAQFNAPTNIIKSGNVYRVRLGPF
CCCCCCCCEECCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCEEEEEECCC
IDRDRADKTLIEAKNGQYTSAFIIQELKK
CCCCCCCCEEEECCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRVILLAVSLILAGCASEPPQKTTDEPNAGRYQIDNDIAPDMPISVEHIEDAHPRYEPKS
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEHHHHCCCCCCCCCHH
LYGNKDYTLLGKDYPIVKEPKGFTQEGISSWYGKKFHGHKTSNGEVYDMYSMSAAHKTLP
HCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHCCC
LPSYVKVTNKDNGKTAIVRVNDRGPFHEGRIIDLSFAAAAKLDVLKTGTANVKIEYISVA
CCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEEHHHHHEEEEEECCCCEEEEEEEEEE
KPTNPQEWHAIDPNQYHIQMVAVKNEQSADKIAKKLEAQFNAPTNIIKSGNVYRVRLGPF
CCCCCCCCEECCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCCEECCCCEEEEEECCC
IDRDRADKTLIEAKNGQYTSAFIIQELKK
CCCCCCCCEEEECCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]