| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is chiA [H]
Identifier: 59711262
GI number: 59711262
Start: 718381
End: 720921
Strand: Reverse
Name: chiA [H]
Synonym: VF_0655
Alternate gene names: 59711262
Gene position: 720921-718381 (Counterclockwise)
Preceding gene: 172087673
Following gene: 172087672
Centisome position: 24.88
GC content: 39.98
Gene sequence:
>2541_bases ATGAAAGGGATATTCATTAAGAGTGCTATTGCTTCTGCTCTCTTTATCTCATATGGAGCAAATGCATTTGATTGTAGCTC GACGCCAATTTGGCAAAGTACTCAAGCTTATAGTGGGGGGGATACTGTTCAACAAAACAATATTGCTTACCAAGCCCAAT GGTGGTCACAAGGAAACGATCCAGAAACACATTCCGGTGAATGGCAAGAATGGAAGAATCTTGGTAAATGTAGTACAGGA GGTGAGAATATCGCACCAACAGTGACAATCATATCCCCAATAAATAATGCCATAATCCCTGAAGCTAGCCTGATAACACT TCAAGCGAGTGCTGATGATAAAGACGGTTCCATTACTCAAGTAGAATTCTTATCAAACAATCAATCTATTGCCATTGTTA CCAGCCCTCCTTATAACACACCTTGGATTGCTATTAAAAACACCACATCAATTATTGTTATTGCCACAGACGATGAAGGT GCCACCACCACAGAATCTGTTTCTATAAAGGTTCAATCAGCAGGTGAACTTGTCCCTCCAACAATTGAACTTACCTCTCC AATAGGAAATGAAAAACTAACAACAGGCGACACATTAGTCGTTTCAGCCAATGCAAATGACAGTGATGGCGTAATTAATA ATGTCGAGTTCTACATTGATAATCAACTTGCTTTTACTGATACCGAAGCACCTTTTGAGTATTCATGGTTAGCGACAAGC GGTCCTCACCAATTTAAAGCAAAGGCGACAGATAATGATAATCAGACAACCATAAGTAAAGGCGTTACACTTGAGGTATC TGAACCATCCAGTGGTGGGTGTGCAGGCCTCCCTCAATACAAGTCTGGAACAAACTATGCGGCTGGTGATGAAGTTCAAA ACTTAAATCAAAAATATCGTTGTGATATTGGTGGTTGGTGCTCATCATCATCAGACTGGGCTTACGCTCCTGGAACGGGA TCTAATTGGCAAGATGCATGGACAGGATTAGGCGTTTGCAGTACACCGCCACAAGTAACGATTACCTCACCAAATGATAA TAGTGTAATTCTTGCTGGTTCTATCGTCGAAGTGAATGCGAGTGCAAGTGATAGTGATGGAAGTGTTATTGGTGTTGAGT TCTTTGCAAACAATGTCACTCTTGGATCTGATACACAAGCACCATATACCGTTAATTGGGATGCTACAGTAATTGGAAGT AATACATTAAAAGCAGTAGCAACAGATAATGAAGGTAATAACAGTGAAAATAGTATTTTGGTTACGGTTAGTGATCAAAA TGTGGTTACAGCACTCACCTCCCCAATAACAGGTTCGAGTTTAGTTCTGGGTAAAATAACTCAACTCAAAGCGACAGCAA CATCTCTAAGCAGTTCTATCACCAAAGTAGACTTCTTAGTTAATGGCGTTATTATCGCCTCAGATACAACATCACCGTAT AGTGTCAATTGGACACCAGCAGCAATTGGAGCTTACACCTTATCGGTCGAAGCTACAGATGCGCAAGGTAATACAGCATT ATCTACTGCTTCAAGTGTCTCTGTTGTAGAACAAACACTAGCGAAACATAAACTTATCGGTTATTGGCACAATTTTGTAA ATGGTTCAGGATGTCCAATTCGCTTAGCTGATATGTCAGATGAATGGGATATTATTGATATCGCTTTTGCTGACAATGAC AGAAACAGTAATGGTACCGTGCATTTTAATCTGTACTCAGGAGATATTCATAGCAGTTGTCCAGCATTAGATCCAACTCA ATTTAAACAGGATATGGCAGCACTACAAGCAAAAGGCAAAGTATTTGTTCTTTCACTTGGCGGTGCAGAAGGAACCATTA CATTAAATACTGATAATGATGAGGTTAACTTTGTAAATAGTCTAACGGCTATCATTGATGAATGGGGATTTGATGGACTC GATATTGATTTAGAAAGTGGGTCAAATCTACTTCATGGTACTCAAATACAAGCTCGATTACCTACAGCACTTAAACAAAT AGAGGCTAATATGGGTGGCGATATGTATTTAACCATGGCGCCAGAACATCCTTATGTGCAAGGTGGAATGATCGCTTACA GTGGTATTTGGGGTGCCTATATACCGGTGATTAATCAAGTTCGAGATACATTAGATTTATTACACGTTCAACTTTATAAC AATGGCGGGCTACCAAATCCATACATGCCTGGTTCAGCACCTGAAGGTTCTGTCGACATGATGGTAGCGTCAGTAAAAAT GCTAGTTGAGGGTTTTGAATTAGCAGATGGTACCTTCTTCGCTCCATTAAGGGATGATCAAGTTGCGATTGGATTACCAT CAGGCCCAAGCTCTGCAAACTCAGGTCAAGCTCCAATTCAAAACATTGTCGATGCACTAGACTGTGTTACTTATGGCACC GCATGCAGTTCAGTGGTTCCAAGTAAACTCTACTCAAACTTTGGTGGAGTAATGACATGGTCAATCAATTGGGATTTACA TGATGGATTTAATTTTTCCAAACCCGTTGGTGATAAATTAAATCAAATGAATAATCAATAA
Upstream 100 bases:
>100_bases CAAAACAAAATAAAAAAACACACTTATTTTCTACTAGAACTTAATTGGTATTAAAGATTTAACGCTAAAAACCATTCATT CGATAATTAAGGATACATAT
Downstream 100 bases:
>100_bases ATAGTAGACACAAAAAAGGCGCTTTAATTAGCGCCTTTTTTATTTCATTCTATTGTGAAGATTACTCTTCGTCGAAGTCG TACTCGTCTTCTTCTTCATC
Product: endochitinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MKGIFIKSAIASALFISYGANAFDCSSTPIWQSTQAYSGGDTVQQNNIAYQAQWWSQGNDPETHSGEWQEWKNLGKCSTG GENIAPTVTIISPINNAIIPEASLITLQASADDKDGSITQVEFLSNNQSIAIVTSPPYNTPWIAIKNTTSIIVIATDDEG ATTTESVSIKVQSAGELVPPTIELTSPIGNEKLTTGDTLVVSANANDSDGVINNVEFYIDNQLAFTDTEAPFEYSWLATS GPHQFKAKATDNDNQTTISKGVTLEVSEPSSGGCAGLPQYKSGTNYAAGDEVQNLNQKYRCDIGGWCSSSSDWAYAPGTG SNWQDAWTGLGVCSTPPQVTITSPNDNSVILAGSIVEVNASASDSDGSVIGVEFFANNVTLGSDTQAPYTVNWDATVIGS NTLKAVATDNEGNNSENSILVTVSDQNVVTALTSPITGSSLVLGKITQLKATATSLSSSITKVDFLVNGVIIASDTTSPY SVNWTPAAIGAYTLSVEATDAQGNTALSTASSVSVVEQTLAKHKLIGYWHNFVNGSGCPIRLADMSDEWDIIDIAFADND RNSNGTVHFNLYSGDIHSSCPALDPTQFKQDMAALQAKGKVFVLSLGGAEGTITLNTDNDEVNFVNSLTAIIDEWGFDGL DIDLESGSNLLHGTQIQARLPTALKQIEANMGGDMYLTMAPEHPYVQGGMIAYSGIWGAYIPVINQVRDTLDLLHVQLYN NGGLPNPYMPGSAPEGSVDMMVASVKMLVEGFELADGTFFAPLRDDQVAIGLPSGPSSANSGQAPIQNIVDALDCVTYGT ACSSVVPSKLYSNFGGVMTWSINWDLHDGFNFSKPVGDKLNQMNNQ
Sequences:
>Translated_846_residues MKGIFIKSAIASALFISYGANAFDCSSTPIWQSTQAYSGGDTVQQNNIAYQAQWWSQGNDPETHSGEWQEWKNLGKCSTG GENIAPTVTIISPINNAIIPEASLITLQASADDKDGSITQVEFLSNNQSIAIVTSPPYNTPWIAIKNTTSIIVIATDDEG ATTTESVSIKVQSAGELVPPTIELTSPIGNEKLTTGDTLVVSANANDSDGVINNVEFYIDNQLAFTDTEAPFEYSWLATS GPHQFKAKATDNDNQTTISKGVTLEVSEPSSGGCAGLPQYKSGTNYAAGDEVQNLNQKYRCDIGGWCSSSSDWAYAPGTG SNWQDAWTGLGVCSTPPQVTITSPNDNSVILAGSIVEVNASASDSDGSVIGVEFFANNVTLGSDTQAPYTVNWDATVIGS NTLKAVATDNEGNNSENSILVTVSDQNVVTALTSPITGSSLVLGKITQLKATATSLSSSITKVDFLVNGVIIASDTTSPY SVNWTPAAIGAYTLSVEATDAQGNTALSTASSVSVVEQTLAKHKLIGYWHNFVNGSGCPIRLADMSDEWDIIDIAFADND RNSNGTVHFNLYSGDIHSSCPALDPTQFKQDMAALQAKGKVFVLSLGGAEGTITLNTDNDEVNFVNSLTAIIDEWGFDGL DIDLESGSNLLHGTQIQARLPTALKQIEANMGGDMYLTMAPEHPYVQGGMIAYSGIWGAYIPVINQVRDTLDLLHVQLYN NGGLPNPYMPGSAPEGSVDMMVASVKMLVEGFELADGTFFAPLRDDQVAIGLPSGPSSANSGQAPIQNIVDALDCVTYGT ACSSVVPSKLYSNFGGVMTWSINWDLHDGFNFSKPVGDKLNQMNNQ >Mature_846_residues MKGIFIKSAIASALFISYGANAFDCSSTPIWQSTQAYSGGDTVQQNNIAYQAQWWSQGNDPETHSGEWQEWKNLGKCSTG GENIAPTVTIISPINNAIIPEASLITLQASADDKDGSITQVEFLSNNQSIAIVTSPPYNTPWIAIKNTTSIIVIATDDEG ATTTESVSIKVQSAGELVPPTIELTSPIGNEKLTTGDTLVVSANANDSDGVINNVEFYIDNQLAFTDTEAPFEYSWLATS GPHQFKAKATDNDNQTTISKGVTLEVSEPSSGGCAGLPQYKSGTNYAAGDEVQNLNQKYRCDIGGWCSSSSDWAYAPGTG SNWQDAWTGLGVCSTPPQVTITSPNDNSVILAGSIVEVNASASDSDGSVIGVEFFANNVTLGSDTQAPYTVNWDATVIGS NTLKAVATDNEGNNSENSILVTVSDQNVVTALTSPITGSSLVLGKITQLKATATSLSSSITKVDFLVNGVIIASDTTSPY SVNWTPAAIGAYTLSVEATDAQGNTALSTASSVSVVEQTLAKHKLIGYWHNFVNGSGCPIRLADMSDEWDIIDIAFADND RNSNGTVHFNLYSGDIHSSCPALDPTQFKQDMAALQAKGKVFVLSLGGAEGTITLNTDNDEVNFVNSLTAIIDEWGFDGL DIDLESGSNLLHGTQIQARLPTALKQIEANMGGDMYLTMAPEHPYVQGGMIAYSGIWGAYIPVINQVRDTLDLLHVQLYN NGGLPNPYMPGSAPEGSVDMMVASVKMLVEGFELADGTFFAPLRDDQVAIGLPSGPSSANSGQAPIQNIVDALDCVTYGT ACSSVVPSKLYSNFGGVMTWSINWDLHDGFNFSKPVGDKLNQMNNQ
Specific function: Unknown
COG id: COG3979
COG function: function code R; Uncharacterized protein contain chitin-binding domain type 3
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR015520 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 89592; Mature: 89592
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: PS00093 N4_MTASE ; PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGIFIKSAIASALFISYGANAFDCSSTPIWQSTQAYSGGDTVQQNNIAYQAQWWSQGND CCCEEHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEECCCEEEEEEECCCCCC PETHSGEWQEWKNLGKCSTGGENIAPTVTIISPINNAIIPEASLITLQASADDKDGSITQ CCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEE VEFLSNNQSIAIVTSPPYNTPWIAIKNTTSIIVIATDDEGATTTESVSIKVQSAGELVPP EEEECCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCC TIELTSPIGNEKLTTGDTLVVSANANDSDGVINNVEFYIDNQLAFTDTEAPFEYSWLATS EEEECCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEECCEEEEECCCCCEEEEEEECC GPHQFKAKATDNDNQTTISKGVTLEVSEPSSGGCAGLPQYKSGTNYAAGDEVQNLNQKYR CCCEEEEECCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEE CDIGGWCSSSSDWAYAPGTGSNWQDAWTGLGVCSTPPQVTITSPNDNSVILAGSIVEVNA ECCCCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEC SASDSDGSVIGVEFFANNVTLGSDTQAPYTVNWDATVIGSNTLKAVATDNEGNNSENSIL CCCCCCCCEEEEEEEECCEEECCCCCCCEEECCCEEEECCCCEEEEEECCCCCCCCCEEE VTVSDQNVVTALTSPITGSSLVLGKITQLKATATSLSSSITKVDFLVNGVIIASDTTSPY EEECCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEECCCCCE SVNWTPAAIGAYTLSVEATDAQGNTALSTASSVSVVEQTLAKHKLIGYWHNFVNGSGCPI EECCCCCEEEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE RLADMSDEWDIIDIAFADNDRNSNGTVHFNLYSGDIHSSCPALDPTQFKQDMAALQAKGK EEECCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC VFVLSLGGAEGTITLNTDNDEVNFVNSLTAIIDEWGFDGLDIDLESGSNLLHGTQIQARL EEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCEEEEHH PTALKQIEANMGGDMYLTMAPEHPYVQGGMIAYSGIWGAYIPVINQVRDTLDLLHVQLYN HHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEEEEC NGGLPNPYMPGSAPEGSVDMMVASVKMLVEGFELADGTFFAPLRDDQVAIGLPSGPSSAN CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEECCCEEEECCCCCEEEEECCCCCCCCC SGQAPIQNIVDALDCVTYGTACSSVVPSKLYSNFGGVMTWSINWDLHDGFNFSKPVGDKL CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHH NQMNNQ HHHCCC >Mature Secondary Structure MKGIFIKSAIASALFISYGANAFDCSSTPIWQSTQAYSGGDTVQQNNIAYQAQWWSQGND CCCEEHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEECCCEEEEEEECCCCCC PETHSGEWQEWKNLGKCSTGGENIAPTVTIISPINNAIIPEASLITLQASADDKDGSITQ CCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEE VEFLSNNQSIAIVTSPPYNTPWIAIKNTTSIIVIATDDEGATTTESVSIKVQSAGELVPP EEEECCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCC TIELTSPIGNEKLTTGDTLVVSANANDSDGVINNVEFYIDNQLAFTDTEAPFEYSWLATS EEEECCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEECCEEEEECCCCCEEEEEEECC GPHQFKAKATDNDNQTTISKGVTLEVSEPSSGGCAGLPQYKSGTNYAAGDEVQNLNQKYR CCCEEEEECCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEE CDIGGWCSSSSDWAYAPGTGSNWQDAWTGLGVCSTPPQVTITSPNDNSVILAGSIVEVNA ECCCCCCCCCCCEEECCCCCCCCHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEC SASDSDGSVIGVEFFANNVTLGSDTQAPYTVNWDATVIGSNTLKAVATDNEGNNSENSIL CCCCCCCCEEEEEEEECCEEECCCCCCCEEECCCEEEECCCCEEEEEECCCCCCCCCEEE VTVSDQNVVTALTSPITGSSLVLGKITQLKATATSLSSSITKVDFLVNGVIIASDTTSPY EEECCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEECCCCCE SVNWTPAAIGAYTLSVEATDAQGNTALSTASSVSVVEQTLAKHKLIGYWHNFVNGSGCPI EECCCCCEEEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE RLADMSDEWDIIDIAFADNDRNSNGTVHFNLYSGDIHSSCPALDPTQFKQDMAALQAKGK EEECCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC VFVLSLGGAEGTITLNTDNDEVNFVNSLTAIIDEWGFDGLDIDLESGSNLLHGTQIQARL EEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCEEEEHH PTALKQIEANMGGDMYLTMAPEHPYVQGGMIAYSGIWGAYIPVINQVRDTLDLLHVQLYN HHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEEEEC NGGLPNPYMPGSAPEGSVDMMVASVKMLVEGFELADGTFFAPLRDDQVAIGLPSGPSSAN CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEECCCEEEECCCCCEEEEECCCCCCCCC SGQAPIQNIVDALDCVTYGTACSSVVPSKLYSNFGGVMTWSINWDLHDGFNFSKPVGDKL CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHH NQMNNQ HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1729234 [H]