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The map label for this gene is ygdH [H]

Identifier: 59711202

GI number: 59711202

Start: 652798

End: 654156

Strand: Reverse

Name: ygdH [H]

Synonym: VF_0595

Alternate gene names: 59711202

Gene position: 654156-652798 (Counterclockwise)

Preceding gene: 59711203

Following gene: 59711201

Centisome position: 22.58

GC content: 39.74

Gene sequence:

>1359_bases
ATGATTACTCATATAAGCCCTGCAGGTAGCATGGATTTGCTATCACAATTAGAAGTTGATCAGTTAAAAAAAACCGCTTC
AAGTGAACTTTACCGTATGTATCGAAACTGTACATTAGCGGTATTAAATTCAGGAAGTCATACTGATAGCTCGAAAGAAT
TATTAGATAAATATCAGTCATTTGATGTTGCCGTTACGCGCCGAGATCGCGGAATTAAACTTGAATTAAATAACCCACCA
GAGCACGCATTCGTTGATGGGACTATCATTAAAGGTATTCAAGAACATCTGTTTTCTGTTTTACGTGACATGGTTTACGT
GAACATGCAAATCGCTGATCACAATAGACTAAACCTCACCAAAGCTACTCACCTAACTAACTTAGTATTTAGTATCTTGC
GTAATGCAAAAGCCTTGCATACCGGTATTGAGCCTAACTTAGTCGTATGTTGGGGCGGACATTCAATTAATCCTGTCGAA
TATCAATACACTCGTGAAGTCGGTCATGAACTAGGTTTACGTGAATTAAATATTTGTACTGGTTGTGGTCCCGGAGCAAT
GGAAGGCCCAATGAAAGGAGCTGCTATTGGTCATGCGAAACAACGTTATAACGATAGTCGATTTGTTGGTCTAACCGAGC
CATCAATCATTGCGGCAGAGCCACCAAACCCTATCGTAAATGAACTTATCATTATGCCTGATATTGAAAAACGTTTAGAA
GCGTTTGTACGTATGGCTCATGGTATTGTTATTTTCCCTGGAGGCCCAGGAACGGCAGAAGAGTTGCTTTATATCTTAGG
GATCATGATGAACCCTGCGAATAGACAGCAGCCTATGCCTATCGTTCTTACTGGTCCAAAAGAGAGTGAGGCTTATTTCC
GCTCTATTGATACCTTTATTCGCGATACCTTAGGCGAAGAAGCTACTCACTATTATGATATTGTTATTGGCGACCCAGCT
AAAGCAGCGGTTTTCATTAATCATGGTATTAAGAAGGTAAAAGAATACCGTAAAGCAACGGATGACTCTTATAGCTTTAA
CTGGGCACTAAAAATTGAGCCTGAATTCCAATTACCATTTGAACCAACCCATGAAGCGATGTCAGCTTTAGATTTACATT
TAAATCAGCCTAAAGAAACATTAGCTGCCAACTTACGTCAAGCATTCTCAGGAATTGTATCTGGTAATGTGAAAGCCGAA
GGTATTGCAGAGATCGAAAAGCACGGTGTCTTTAAACTGCATGGTGATCCTGCCTTAATGAAAAAGATGGATCGTTTACT
TCAAGACTTTGTAAAACAAGGTCGAATGAAGTTACCGGGTTCTAAGTACGAGCCTTGCTATAAAATCGTTATGGATTAA

Upstream 100 bases:

>100_bases
ATAACCCTCTCAGTTTTTTACAATTTTCCTAGCAAAAGTCTCTTTTGCTGTGTAAGTTTATTATTCGAACAATAATAAAA
ATACGCAAGGGAGGCATAAT

Downstream 100 bases:

>100_bases
GGCTGGAATTTTTCACCTTCACTAACGTACAATAATAAGCCTATGCAGAATGCGTAGGCTTTTTTCTTTTTTTATAGATA
GGAATGAATACGTTATGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MITHISPAGSMDLLSQLEVDQLKKTASSELYRMYRNCTLAVLNSGSHTDSSKELLDKYQSFDVAVTRRDRGIKLELNNPP
EHAFVDGTIIKGIQEHLFSVLRDMVYVNMQIADHNRLNLTKATHLTNLVFSILRNAKALHTGIEPNLVVCWGGHSINPVE
YQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAIGHAKQRYNDSRFVGLTEPSIIAAEPPNPIVNELIIMPDIEKRLE
AFVRMAHGIVIFPGGPGTAEELLYILGIMMNPANRQQPMPIVLTGPKESEAYFRSIDTFIRDTLGEEATHYYDIVIGDPA
KAAVFINHGIKKVKEYRKATDDSYSFNWALKIEPEFQLPFEPTHEAMSALDLHLNQPKETLAANLRQAFSGIVSGNVKAE
GIAEIEKHGVFKLHGDPALMKKMDRLLQDFVKQGRMKLPGSKYEPCYKIVMD

Sequences:

>Translated_452_residues
MITHISPAGSMDLLSQLEVDQLKKTASSELYRMYRNCTLAVLNSGSHTDSSKELLDKYQSFDVAVTRRDRGIKLELNNPP
EHAFVDGTIIKGIQEHLFSVLRDMVYVNMQIADHNRLNLTKATHLTNLVFSILRNAKALHTGIEPNLVVCWGGHSINPVE
YQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAIGHAKQRYNDSRFVGLTEPSIIAAEPPNPIVNELIIMPDIEKRLE
AFVRMAHGIVIFPGGPGTAEELLYILGIMMNPANRQQPMPIVLTGPKESEAYFRSIDTFIRDTLGEEATHYYDIVIGDPA
KAAVFINHGIKKVKEYRKATDDSYSFNWALKIEPEFQLPFEPTHEAMSALDLHLNQPKETLAANLRQAFSGIVSGNVKAE
GIAEIEKHGVFKLHGDPALMKKMDRLLQDFVKQGRMKLPGSKYEPCYKIVMD
>Mature_452_residues
MITHISPAGSMDLLSQLEVDQLKKTASSELYRMYRNCTLAVLNSGSHTDSSKELLDKYQSFDVAVTRRDRGIKLELNNPP
EHAFVDGTIIKGIQEHLFSVLRDMVYVNMQIADHNRLNLTKATHLTNLVFSILRNAKALHTGIEPNLVVCWGGHSINPVE
YQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAIGHAKQRYNDSRFVGLTEPSIIAAEPPNPIVNELIIMPDIEKRLE
AFVRMAHGIVIFPGGPGTAEELLYILGIMMNPANRQQPMPIVLTGPKESEAYFRSIDTFIRDTLGEEATHYYDIVIGDPA
KAAVFINHGIKKVKEYRKATDDSYSFNWALKIEPEFQLPFEPTHEAMSALDLHLNQPKETLAANLRQAFSGIVSGNVKAE
GIAEIEKHGVFKLHGDPALMKKMDRLLQDFVKQGRMKLPGSKYEPCYKIVMD

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=452, Percent_Identity=66.5929203539823, Blast_Score=640, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50478; Mature: 50478

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHISPAGSMDLLSQLEVDQLKKTASSELYRMYRNCTLAVLNSGSHTDSSKELLDKYQS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHC
FDVAVTRRDRGIKLELNNPPEHAFVDGTIIKGIQEHLFSVLRDMVYVNMQIADHNRLNLT
CCEEEEECCCCEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHH
KATHLTNLVFSILRNAKALHTGIEPNLVVCWGGHSINPVEYQYTREVGHELGLRELNICT
HHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEC
GCGPGAMEGPMKGAAIGHAKQRYNDSRFVGLTEPSIIAAEPPNPIVNELIIMPDIEKRLE
CCCCCCCCCCCCCCHHCCHHHHCCCCEEEEECCCCEEECCCCCHHHHHEEECCCHHHHHH
AFVRMAHGIVIFPGGPGTAEELLYILGIMMNPANRQQPMPIVLTGPKESEAYFRSIDTFI
HHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
RDTLGEEATHYYDIVIGDPAKAAVFINHGIKKVKEYRKATDDSYSFNWALKIEPEFQLPF
HHHHCCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEEECCCEECCC
EPTHEAMSALDLHLNQPKETLAANLRQAFSGIVSGNVKAEGIAEIEKHGVFKLHGDPALM
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEECCCHHHH
KKMDRLLQDFVKQGRMKLPGSKYEPCYKIVMD
HHHHHHHHHHHHCCCCCCCCCCCCCHHHEECC
>Mature Secondary Structure
MITHISPAGSMDLLSQLEVDQLKKTASSELYRMYRNCTLAVLNSGSHTDSSKELLDKYQS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHC
FDVAVTRRDRGIKLELNNPPEHAFVDGTIIKGIQEHLFSVLRDMVYVNMQIADHNRLNLT
CCEEEEECCCCEEEEECCCCCCEEECHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHH
KATHLTNLVFSILRNAKALHTGIEPNLVVCWGGHSINPVEYQYTREVGHELGLRELNICT
HHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEC
GCGPGAMEGPMKGAAIGHAKQRYNDSRFVGLTEPSIIAAEPPNPIVNELIIMPDIEKRLE
CCCCCCCCCCCCCCHHCCHHHHCCCCEEEEECCCCEEECCCCCHHHHHEEECCCHHHHHH
AFVRMAHGIVIFPGGPGTAEELLYILGIMMNPANRQQPMPIVLTGPKESEAYFRSIDTFI
HHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
RDTLGEEATHYYDIVIGDPAKAAVFINHGIKKVKEYRKATDDSYSFNWALKIEPEFQLPF
HHHHCCCCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEEEEECCCEECCC
EPTHEAMSALDLHLNQPKETLAANLRQAFSGIVSGNVKAEGIAEIEKHGVFKLHGDPALM
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEECCCHHHH
KKMDRLLQDFVKQGRMKLPGSKYEPCYKIVMD
HHHHHHHHHHHHCCCCCCCCCCCCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]