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The map label for this gene is yfiO [C]

Identifier: 59711170

GI number: 59711170

Start: 611309

End: 612034

Strand: Reverse

Name: yfiO [C]

Synonym: VF_0563

Alternate gene names: 59711170

Gene position: 612034-611309 (Counterclockwise)

Preceding gene: 59711175

Following gene: 59711169

Centisome position: 21.12

GC content: 37.74

Gene sequence:

>726_bases
ATGAAACGCTTAACCATTTCTTCATTATTAGCTGTATCTTTACTGGTTGGTTGCTCAAGTAGTGATGATGTAATTCCAGA
TATTCCACCATCAGAATTATACGCTCAAGCTCAAGTATCTTTACAAGCAGGTAATTGGACGAGCGCAATTGAGCGTCTTG
AAGCTTTAGATTCTCGATACCCTTTTGGCGCTTATTCTGAACAAGTTCAGCTAGACCTTATTTATGTTTATTATAAAAAT
GATGATCTTGCGTTAGGTCTTGCAACTATCGAGAGATTTACTCGTTTAAATCCAACCCACCCGAAAGCAGACTGGGTGCT
TTACATGCGTGGATTAACGCATATGGCTCAAGATAGAAGTTTCATGCATGATTTATTTAGAGTAGATCGTTCAGATCGAG
ATCCAGAACCAGCTCGCTCAGCTTTTAAAGATTTTAAACGATTATTAGAAAGATACCCTAATAGTCTTTATGCTGAAGAT
GCACAAACTCGTATGTACGCACTTAAAAATCGCTTAGCGGATTATGAATTAGCAACGGCTGACTTTTATTTACGACGAGA
AGCTTGGATCTCTGCCATTAATCGTTGTCAAGAATTACAACGTACTTATCCAGATACGGAAGCCGCAAGAAAATCATTAA
CCATTATGCTTTCAGCTTACAAAGAATTAAAACTGGAAGATGCAATTAAGCGAACCGAAGAACTTATTGCGTTGAATCCA
CAATAA

Upstream 100 bases:

>100_bases
CAACACTGTAAGTGAAATAAACTATGTACCATTGTATCTGTTAACGGCGCATTTCGTAATGGATAACTTCAGTTTTTTTA
GTCAAGGATCATTTTCAAGC

Downstream 100 bases:

>100_bases
TATCAATCACAGTAAGTAAATGAACATGTTAACAAGCTACTAGGATGAGCAGTTATTTACTACGATTTGCATAATATTCA
TTATAAAAACAAAAAAGCAG

Product: lipoprotein component of outer membrane protein assembly complex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKRLTISSLLAVSLLVGCSSSDDVIPDIPPSELYAQAQVSLQAGNWTSAIERLEALDSRYPFGAYSEQVQLDLIYVYYKN
DDLALGLATIERFTRLNPTHPKADWVLYMRGLTHMAQDRSFMHDLFRVDRSDRDPEPARSAFKDFKRLLERYPNSLYAED
AQTRMYALKNRLADYELATADFYLRREAWISAINRCQELQRTYPDTEAARKSLTIMLSAYKELKLEDAIKRTEELIALNP
Q

Sequences:

>Translated_241_residues
MKRLTISSLLAVSLLVGCSSSDDVIPDIPPSELYAQAQVSLQAGNWTSAIERLEALDSRYPFGAYSEQVQLDLIYVYYKN
DDLALGLATIERFTRLNPTHPKADWVLYMRGLTHMAQDRSFMHDLFRVDRSDRDPEPARSAFKDFKRLLERYPNSLYAED
AQTRMYALKNRLADYELATADFYLRREAWISAINRCQELQRTYPDTEAARKSLTIMLSAYKELKLEDAIKRTEELIALNP
Q
>Mature_241_residues
MKRLTISSLLAVSLLVGCSSSDDVIPDIPPSELYAQAQVSLQAGNWTSAIERLEALDSRYPFGAYSEQVQLDLIYVYYKN
DDLALGLATIERFTRLNPTHPKADWVLYMRGLTHMAQDRSFMHDLFRVDRSDRDPEPARSAFKDFKRLLERYPNSLYAED
AQTRMYALKNRLADYELATADFYLRREAWISAINRCQELQRTYPDTEAARKSLTIMLSAYKELKLEDAIKRTEELIALNP
Q

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=239, Percent_Identity=53.1380753138075, Blast_Score=271, Evalue=4e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27832; Mature: 27832

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLTISSLLAVSLLVGCSSSDDVIPDIPPSELYAQAQVSLQAGNWTSAIERLEALDSRY
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEEECCCHHHHHHHHHHHHCCC
PFGAYSEQVQLDLIYVYYKNDDLALGLATIERFTRLNPTHPKADWVLYMRGLTHMAQDRS
CCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FMHDLFRVDRSDRDPEPARSAFKDFKRLLERYPNSLYAEDAQTRMYALKNRLADYELATA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
DFYLRREAWISAINRCQELQRTYPDTEAARKSLTIMLSAYKELKLEDAIKRTEELIALNP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q
C
>Mature Secondary Structure
MKRLTISSLLAVSLLVGCSSSDDVIPDIPPSELYAQAQVSLQAGNWTSAIERLEALDSRY
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEEECCCHHHHHHHHHHHHCCC
PFGAYSEQVQLDLIYVYYKNDDLALGLATIERFTRLNPTHPKADWVLYMRGLTHMAQDRS
CCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
FMHDLFRVDRSDRDPEPARSAFKDFKRLLERYPNSLYAEDAQTRMYALKNRLADYELATA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
DFYLRREAWISAINRCQELQRTYPDTEAARKSLTIMLSAYKELKLEDAIKRTEELIALNP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]