BacMap

Definition	Vibrio fischeri ES114 chromosome I, complete genome.
Accession	NC_006840
Length	2,897,536

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The map label for this gene is srmB [H]

Identifier: 59711051

GI number: 59711051

Start: 473008

End: 474249

Strand: Reverse

Name: srmB [H]

Synonym: VF_0444

Alternate gene names: 59711051

Gene position: 474249-473008 (Counterclockwise)

Preceding gene: 59711052

Following gene: 59711046

Centisome position: 16.37

GC content: 42.35

Gene sequence:

>1242_bases
GTGCTCAAAACGTTTGCTGACCTCGATCTATCACCTAACCTATTGCGTGCTCTTGAGGAGATAGATTATCAACGTCCAAC
TCAAGTTCAGGCTATGACTATCCCTGAAGCATTAGAAGGTAAAGATATCCTTGCTTCTGCACCAACAGGGACAGGTAAAT
CTGCTGCATTCTTATTACCAGCTCTTCAGCACTTAGATGACTTCCCTCGTCGCGAACCAGGACCTGCTCGTATTCTTATC
CTGACGCCTACACGTGAATTAGCAATTCAAGTTGCTGATGAAGCTCGTCAATTAGCAAAATATACTCGTCATAAAGTATT
TACGATTACAGGTGGTATTAGCTACCAAGATCACGCTGATATTTTAGCTACTACTCAAGATATCGTTGTAGCAACCCCTG
GTCGTTTAATGGAGTACATCGAAGCTGAGCGCTTTGATTGTCGAGCTATTGAAACCCTTATTCTTGATGAAGCAGATCGC
ATGTTAGATATGGGTTTTGGCCCTGTTGTTGACCGTCTATCTAAAGAATGCCGTTGGCGTAAGCAAACCTTCTTATTCTC
AGCGACATTAGAAGGTCGTGGCGTAGAAGGCTTTACTGCAGACCTACTGAATGAACCTGCAGAGATTAATGCAGAGCCAT
CACGCCGTGAGCGTAAAAAGATCACTCAGTGGTACCACCGTGCTGACAACATGGCTCATAAAATTGATCTGTTAAAAAAT
ATCTTAACAGAGCAAGCAGAACGCTCAATTGTATTCGTAAAAACACGTGAACGTTTAGCGGAACTTCGTGGCCACTTAGA
AACAGCAAAAATCCCTTGTGCTTGGATTCAAGGTGAAATGGCTCAAGAAAGCCGTAATAACGCAATTTCTCGCTTCCGTG
ACGGAACAGTAAACGTGTTAATTGCGACAGATGTTGCTGCTCGTGGTATTGATTTACCTGACGTTTCACACGTTATCAAC
TTTGACATGCCACGTACTGCTGATGTGTACTTACACCGTATTGGTCGTACCGCTCGTGCTGGTAAAAAAGGTAATGCGGT
ATCTTTAATTGAAGCGCATGATCAACCAATGATGGAGCGTGTAGGTCGTTACATCAAAGAAGATGACATCATTAAAGAAC
GCTTCATCGAAGGGCTAAAACCTAAGCATAAAAAACCTGTTTTCAAAAATAAACAGAAGAAAAATGCGAAGAAGAAAGCT
GCTTTAGCGAAGAAAAAAGCACCGAAGAAAAAGAAGAAGTAA

Upstream 100 bases:

>100_bases
AATATGGATTAAAAGATCGGTGATTTATTAGAGATGGATCACTATAATGTCCGGCTGACACTATATTTTTAAAATTTCAT
ACCTGAACGGAGAATCAACA

Downstream 100 bases:

>100_bases
TTTAGCTAGCTAGAATGCTTAGCTCTAGAAACGATAAAAGCAGTCTGTATTACAGGCTGCTTTTTTATTTAGAAGTCACT
TAGGTACTAGGGACAAGAAC

Product: ATP-dependent RNA helicase SrmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MLKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQHLDDFPRREPGPARILI
LTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHADILATTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADR
MLDMGFGPVVDRLSKECRWRKQTFLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKN
ILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVLIATDVAARGIDLPDVSHVIN
FDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMERVGRYIKEDDIIKERFIEGLKPKHKKPVFKNKQKKNAKKKA
ALAKKKAPKKKKK

Sequences:

>Translated_413_residues
MLKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQHLDDFPRREPGPARILI
LTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHADILATTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADR
MLDMGFGPVVDRLSKECRWRKQTFLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKN
ILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVLIATDVAARGIDLPDVSHVIN
FDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMERVGRYIKEDDIIKERFIEGLKPKHKKPVFKNKQKKNAKKKA
ALAKKKAPKKKKK
>Mature_413_residues
MLKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLPALQHLDDFPRREPGPARILI
LTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHADILATTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADR
MLDMGFGPVVDRLSKECRWRKQTFLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKN
ILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVLIATDVAARGIDLPDVSHVIN
FDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMERVGRYIKEDDIIKERFIEGLKPKHKKPVFKNKQKKNAKKKA
ALAKKKAPKKKKK

Specific function: RNA-dependent ATPase activity. Probably interacts with 23S ribosomal RNA [H]

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI224593278, Length=387, Percent_Identity=36.6925064599483, Blast_Score=232, Evalue=5e-61,
Organism=Homo sapiens, GI20149629, Length=368, Percent_Identity=36.4130434782609, Blast_Score=227, Evalue=1e-59,
Organism=Homo sapiens, GI4758138, Length=356, Percent_Identity=35.3932584269663, Blast_Score=219, Evalue=5e-57,
Organism=Homo sapiens, GI45446747, Length=354, Percent_Identity=35.3107344632768, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI45446743, Length=354, Percent_Identity=35.3107344632768, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI148613856, Length=351, Percent_Identity=35.6125356125356, Blast_Score=215, Evalue=5e-56,
Organism=Homo sapiens, GI38201710, Length=351, Percent_Identity=35.6125356125356, Blast_Score=215, Evalue=5e-56,
Organism=Homo sapiens, GI262118318, Length=437, Percent_Identity=33.8672768878719, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI262231852, Length=437, Percent_Identity=33.8672768878719, Blast_Score=212, Evalue=6e-55,
Organism=Homo sapiens, GI216548263, Length=437, Percent_Identity=33.8672768878719, Blast_Score=211, Evalue=7e-55,
Organism=Homo sapiens, GI13518015, Length=437, Percent_Identity=33.8672768878719, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI51094101, Length=357, Percent_Identity=36.1344537815126, Blast_Score=210, Evalue=2e-54,
Organism=Homo sapiens, GI164419743, Length=357, Percent_Identity=36.1344537815126, Blast_Score=210, Evalue=2e-54,
Organism=Homo sapiens, GI164664518, Length=368, Percent_Identity=34.7826086956522, Blast_Score=208, Evalue=7e-54,
Organism=Homo sapiens, GI87196351, Length=371, Percent_Identity=35.3099730458221, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI301171467, Length=371, Percent_Identity=35.3099730458221, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI301171475, Length=371, Percent_Identity=35.3099730458221, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI31542656, Length=373, Percent_Identity=35.3887399463807, Blast_Score=207, Evalue=2e-53,
Organism=Homo sapiens, GI41327773, Length=405, Percent_Identity=34.0740740740741, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI169881239, Length=371, Percent_Identity=34.5013477088949, Blast_Score=203, Evalue=3e-52,
Organism=Homo sapiens, GI13514809, Length=371, Percent_Identity=34.5013477088949, Blast_Score=203, Evalue=3e-52,
Organism=Homo sapiens, GI41327776, Length=364, Percent_Identity=32.6923076923077, Blast_Score=201, Evalue=8e-52,
Organism=Homo sapiens, GI222352149, Length=393, Percent_Identity=33.0788804071247, Blast_Score=200, Evalue=3e-51,
Organism=Homo sapiens, GI41327771, Length=386, Percent_Identity=32.6424870466321, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI7661920, Length=362, Percent_Identity=31.767955801105, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI55749865, Length=388, Percent_Identity=30.9278350515464, Blast_Score=195, Evalue=5e-50,
Organism=Homo sapiens, GI21071032, Length=360, Percent_Identity=31.6666666666667, Blast_Score=186, Evalue=5e-47,
Organism=Homo sapiens, GI21040371, Length=352, Percent_Identity=31.25, Blast_Score=184, Evalue=1e-46,
Organism=Homo sapiens, GI13514831, Length=381, Percent_Identity=32.0209973753281, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI4758112, Length=355, Percent_Identity=32.6760563380282, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI18375623, Length=355, Percent_Identity=32.6760563380282, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI9506931, Length=389, Percent_Identity=33.1619537275064, Blast_Score=178, Evalue=8e-45,
Organism=Homo sapiens, GI38327634, Length=382, Percent_Identity=31.413612565445, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI188035877, Length=373, Percent_Identity=32.4396782841823, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI38569505, Length=392, Percent_Identity=30.6122448979592, Blast_Score=172, Evalue=6e-43,
Organism=Homo sapiens, GI38569503, Length=445, Percent_Identity=30.1123595505618, Blast_Score=172, Evalue=7e-43,
Organism=Homo sapiens, GI8922886, Length=382, Percent_Identity=31.6753926701571, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI6005743, Length=382, Percent_Identity=31.413612565445, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI41327779, Length=370, Percent_Identity=34.5945945945946, Blast_Score=167, Evalue=1e-41,
Organism=Homo sapiens, GI13129006, Length=383, Percent_Identity=29.5039164490862, Blast_Score=165, Evalue=9e-41,
Organism=Homo sapiens, GI164419732, Length=378, Percent_Identity=33.0687830687831, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI50659095, Length=372, Percent_Identity=29.5698924731183, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI83700235, Length=366, Percent_Identity=30.327868852459, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI4503529, Length=357, Percent_Identity=30.2521008403361, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI62241022, Length=357, Percent_Identity=31.6526610644258, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI62241024, Length=341, Percent_Identity=31.6715542521994, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI9966805, Length=362, Percent_Identity=31.4917127071823, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI17505907, Length=434, Percent_Identity=27.6497695852535, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI256223453, Length=384, Percent_Identity=29.6875, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI256773275, Length=395, Percent_Identity=31.8987341772152, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI154759257, Length=415, Percent_Identity=28.9156626506024, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI4826686, Length=336, Percent_Identity=26.7857142857143, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI20336298, Length=219, Percent_Identity=34.2465753424658, Blast_Score=101, Evalue=1e-21,
Organism=Escherichia coli, GI1788930, Length=382, Percent_Identity=60.4712041884817, Blast_Score=463, Evalue=1e-132,
Organism=Escherichia coli, GI1787016, Length=381, Percent_Identity=37.5328083989501, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI87082221, Length=364, Percent_Identity=38.1868131868132, Blast_Score=242, Evalue=4e-65,
Organism=Escherichia coli, GI1790214, Length=358, Percent_Identity=36.0335195530726, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1787605, Length=351, Percent_Identity=36.7521367521368, Blast_Score=206, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17555296, Length=361, Percent_Identity=35.4570637119114, Blast_Score=225, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17552642, Length=367, Percent_Identity=35.9673024523161, Blast_Score=218, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI86570094, Length=363, Percent_Identity=36.0881542699724, Blast_Score=218, Evalue=6e-57,
Organism=Caenorhabditis elegans, GI115533224, Length=345, Percent_Identity=35.3623188405797, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17510559, Length=401, Percent_Identity=32.6683291770574, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17552114, Length=360, Percent_Identity=34.1666666666667, Blast_Score=208, Evalue=4e-54,
Organism=Caenorhabditis elegans, GI71995724, Length=365, Percent_Identity=33.1506849315069, Blast_Score=208, Evalue=4e-54,
Organism=Caenorhabditis elegans, GI17507121, Length=365, Percent_Identity=32.8767123287671, Blast_Score=207, Evalue=6e-54,
Organism=Caenorhabditis elegans, GI71999646, Length=356, Percent_Identity=32.0224719101124, Blast_Score=203, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI71999644, Length=356, Percent_Identity=32.0224719101124, Blast_Score=203, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI17507881, Length=376, Percent_Identity=35.3723404255319, Blast_Score=202, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17507877, Length=383, Percent_Identity=34.9869451697128, Blast_Score=201, Evalue=8e-52,
Organism=Caenorhabditis elegans, GI17537549, Length=403, Percent_Identity=31.7617866004963, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17510307, Length=372, Percent_Identity=33.8709677419355, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI17510309, Length=372, Percent_Identity=33.8709677419355, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI71995514, Length=372, Percent_Identity=33.8709677419355, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI32565321, Length=385, Percent_Identity=31.9480519480519, Blast_Score=198, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI71995718, Length=403, Percent_Identity=33.4987593052109, Blast_Score=195, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI17507879, Length=399, Percent_Identity=33.0827067669173, Blast_Score=194, Evalue=7e-50,
Organism=Caenorhabditis elegans, GI71987143, Length=365, Percent_Identity=30.958904109589, Blast_Score=192, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI115532548, Length=399, Percent_Identity=33.3333333333333, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI115532546, Length=384, Percent_Identity=33.59375, Blast_Score=185, Evalue=3e-47,
Organism=Caenorhabditis elegans, GI17505370, Length=352, Percent_Identity=32.3863636363636, Blast_Score=184, Evalue=7e-47,
Organism=Caenorhabditis elegans, GI17509811, Length=361, Percent_Identity=31.8559556786704, Blast_Score=180, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17507945, Length=363, Percent_Identity=32.5068870523416, Blast_Score=176, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI71982858, Length=352, Percent_Identity=31.5340909090909, Blast_Score=173, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17508543, Length=379, Percent_Identity=29.287598944591, Blast_Score=162, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI17507641, Length=384, Percent_Identity=30.7291666666667, Blast_Score=161, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI193206561, Length=350, Percent_Identity=29.1428571428571, Blast_Score=159, Evalue=3e-39,
Organism=Caenorhabditis elegans, GI32564046, Length=372, Percent_Identity=30.6451612903226, Blast_Score=154, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17556951, Length=360, Percent_Identity=30.5555555555556, Blast_Score=153, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI25148203, Length=409, Percent_Identity=26.4058679706601, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI193208216, Length=444, Percent_Identity=27.4774774774775, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17536099, Length=387, Percent_Identity=29.7157622739018, Blast_Score=145, Evalue=4e-35,
Organism=Caenorhabditis elegans, GI17536101, Length=387, Percent_Identity=29.9741602067183, Blast_Score=145, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI71990816, Length=376, Percent_Identity=30.0531914893617, Blast_Score=142, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17536103, Length=387, Percent_Identity=29.9741602067183, Blast_Score=142, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI17553716, Length=374, Percent_Identity=24.331550802139, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71997889, Length=361, Percent_Identity=27.7008310249307, Blast_Score=112, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI25148291, Length=332, Percent_Identity=23.7951807228916, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71982862, Length=191, Percent_Identity=33.5078534031414, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71987152, Length=89, Percent_Identity=41.5730337078652, Blast_Score=83, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6323021, Length=362, Percent_Identity=36.7403314917127, Blast_Score=245, Evalue=8e-66,
Organism=Saccharomyces cerevisiae, GI6321856, Length=372, Percent_Identity=35.2150537634409, Blast_Score=230, Evalue=4e-61,
Organism=Saccharomyces cerevisiae, GI6324217, Length=371, Percent_Identity=32.0754716981132, Blast_Score=214, Evalue=1e-56,
Organism=Saccharomyces cerevisiae, GI6325138, Length=370, Percent_Identity=33.5135135135135, Blast_Score=208, Evalue=2e-54,
Organism=Saccharomyces cerevisiae, GI6320449, Length=416, Percent_Identity=34.8557692307692, Blast_Score=207, Evalue=2e-54,
Organism=Saccharomyces cerevisiae, GI6320041, Length=355, Percent_Identity=35.2112676056338, Blast_Score=206, Evalue=5e-54,
Organism=Saccharomyces cerevisiae, GI6324778, Length=370, Percent_Identity=32.1621621621622, Blast_Score=202, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6320224, Length=372, Percent_Identity=33.0645161290323, Blast_Score=200, Evalue=3e-52,
Organism=Saccharomyces cerevisiae, GI6321360, Length=342, Percent_Identity=34.2105263157895, Blast_Score=195, Evalue=1e-50,
Organism=Saccharomyces cerevisiae, GI6323947, Length=353, Percent_Identity=33.9943342776204, Blast_Score=189, Evalue=6e-49,
Organism=Saccharomyces cerevisiae, GI6322912, Length=361, Percent_Identity=33.5180055401662, Blast_Score=181, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6322323, Length=361, Percent_Identity=33.5180055401662, Blast_Score=181, Evalue=2e-46,
Organism=Saccharomyces cerevisiae, GI6320119, Length=364, Percent_Identity=31.043956043956, Blast_Score=180, Evalue=3e-46,
Organism=Saccharomyces cerevisiae, GI6322427, Length=369, Percent_Identity=31.4363143631436, Blast_Score=180, Evalue=4e-46,
Organism=Saccharomyces cerevisiae, GI6319618, Length=404, Percent_Identity=30.6930693069307, Blast_Score=179, Evalue=1e-45,
Organism=Saccharomyces cerevisiae, GI6321963, Length=443, Percent_Identity=32.0541760722348, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6324620, Length=363, Percent_Identity=31.404958677686, Blast_Score=174, Evalue=2e-44,
Organism=Saccharomyces cerevisiae, GI6323306, Length=419, Percent_Identity=27.6849642004773, Blast_Score=160, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6319714, Length=432, Percent_Identity=28.2407407407407, Blast_Score=160, Evalue=3e-40,
Organism=Saccharomyces cerevisiae, GI6321111, Length=368, Percent_Identity=28.5326086956522, Blast_Score=157, Evalue=3e-39,
Organism=Saccharomyces cerevisiae, GI6320400, Length=379, Percent_Identity=29.5514511873351, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6321267, Length=384, Percent_Identity=29.9479166666667, Blast_Score=145, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6320173, Length=203, Percent_Identity=34.9753694581281, Blast_Score=130, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6324366, Length=348, Percent_Identity=27.8735632183908, Blast_Score=117, Evalue=4e-27,
Organism=Saccharomyces cerevisiae, GI6322876, Length=183, Percent_Identity=27.8688524590164, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24662330, Length=380, Percent_Identity=35, Blast_Score=238, Evalue=5e-63,
Organism=Drosophila melanogaster, GI21356161, Length=352, Percent_Identity=38.0681818181818, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI24584399, Length=353, Percent_Identity=35.6940509915014, Blast_Score=222, Evalue=3e-58,
Organism=Drosophila melanogaster, GI24585582, Length=360, Percent_Identity=35, Blast_Score=219, Evalue=3e-57,
Organism=Drosophila melanogaster, GI24642151, Length=354, Percent_Identity=35.3107344632768, Blast_Score=215, Evalue=4e-56,
Organism=Drosophila melanogaster, GI28574962, Length=342, Percent_Identity=35.672514619883, Blast_Score=211, Evalue=6e-55,
Organism=Drosophila melanogaster, GI24583281, Length=360, Percent_Identity=35.8333333333333, Blast_Score=211, Evalue=9e-55,
Organism=Drosophila melanogaster, GI24583279, Length=360, Percent_Identity=35.8333333333333, Blast_Score=211, Evalue=1e-54,
Organism=Drosophila melanogaster, GI17985987, Length=372, Percent_Identity=34.6774193548387, Blast_Score=206, Evalue=2e-53,
Organism=Drosophila melanogaster, GI28575014, Length=354, Percent_Identity=35.3107344632768, Blast_Score=205, Evalue=4e-53,
Organism=Drosophila melanogaster, GI21355075, Length=363, Percent_Identity=32.5068870523416, Blast_Score=204, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24644487, Length=361, Percent_Identity=32.409972299169, Blast_Score=203, Evalue=2e-52,
Organism=Drosophila melanogaster, GI45551833, Length=361, Percent_Identity=32.409972299169, Blast_Score=203, Evalue=2e-52,
Organism=Drosophila melanogaster, GI24644485, Length=361, Percent_Identity=32.409972299169, Blast_Score=203, Evalue=2e-52,
Organism=Drosophila melanogaster, GI24644483, Length=361, Percent_Identity=32.409972299169, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI281361218, Length=361, Percent_Identity=32.409972299169, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24644481, Length=361, Percent_Identity=32.409972299169, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24644479, Length=361, Percent_Identity=32.409972299169, Blast_Score=202, Evalue=4e-52,
Organism=Drosophila melanogaster, GI24645031, Length=365, Percent_Identity=31.7808219178082, Blast_Score=195, Evalue=5e-50,
Organism=Drosophila melanogaster, GI18857967, Length=361, Percent_Identity=32.409972299169, Blast_Score=195, Evalue=5e-50,
Organism=Drosophila melanogaster, GI17977678, Length=360, Percent_Identity=32.7777777777778, Blast_Score=192, Evalue=4e-49,
Organism=Drosophila melanogaster, GI24584994, Length=393, Percent_Identity=31.5521628498728, Blast_Score=188, Evalue=5e-48,
Organism=Drosophila melanogaster, GI20130173, Length=441, Percent_Identity=31.5192743764172, Blast_Score=181, Evalue=7e-46,
Organism=Drosophila melanogaster, GI24581954, Length=350, Percent_Identity=31.1428571428571, Blast_Score=177, Evalue=2e-44,
Organism=Drosophila melanogaster, GI24581952, Length=350, Percent_Identity=31.1428571428571, Blast_Score=177, Evalue=2e-44,
Organism=Drosophila melanogaster, GI24581956, Length=350, Percent_Identity=31.1428571428571, Blast_Score=177, Evalue=2e-44,
Organism=Drosophila melanogaster, GI17136814, Length=351, Percent_Identity=31.9088319088319, Blast_Score=176, Evalue=2e-44,
Organism=Drosophila melanogaster, GI281365720, Length=293, Percent_Identity=35.1535836177474, Blast_Score=170, Evalue=1e-42,
Organism=Drosophila melanogaster, GI28571808, Length=374, Percent_Identity=29.144385026738, Blast_Score=170, Evalue=1e-42,
Organism=Drosophila melanogaster, GI28571809, Length=374, Percent_Identity=29.144385026738, Blast_Score=170, Evalue=1e-42,
Organism=Drosophila melanogaster, GI24642822, Length=381, Percent_Identity=31.758530183727, Blast_Score=169, Evalue=4e-42,
Organism=Drosophila melanogaster, GI24582080, Length=362, Percent_Identity=31.4917127071823, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI24582078, Length=362, Percent_Identity=31.4917127071823, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI17136248, Length=362, Percent_Identity=31.4917127071823, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI24582075, Length=362, Percent_Identity=31.4917127071823, Blast_Score=168, Evalue=7e-42,
Organism=Drosophila melanogaster, GI17647335, Length=359, Percent_Identity=31.7548746518106, Blast_Score=167, Evalue=9e-42,
Organism=Drosophila melanogaster, GI24643725, Length=439, Percent_Identity=29.6127562642369, Blast_Score=161, Evalue=1e-39,
Organism=Drosophila melanogaster, GI21355559, Length=380, Percent_Identity=34.4736842105263, Blast_Score=160, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24666101, Length=367, Percent_Identity=29.700272479564, Blast_Score=157, Evalue=1e-38,
Organism=Drosophila melanogaster, GI17136666, Length=431, Percent_Identity=28.3062645011601, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24640164, Length=350, Percent_Identity=26, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI19920478, Length=360, Percent_Identity=29.1666666666667, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24668515, Length=341, Percent_Identity=26.9794721407625, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI28571338, Length=225, Percent_Identity=32, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI18859659, Length=225, Percent_Identity=32, Blast_Score=96, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 46745; Mature: 46745

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLP
CCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHCCCCEEEECCCCCCCHHHHHHH
ALQHLDDFPRREPGPARILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHAD
HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCH
ILATTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWR
HHEECCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
KQTFLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKN
HHHEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVL
HHHHHHHCCEEEEEHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMER
EEECHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHH
VGRYIKEDDIIKERFIEGLKPKHKKPVFKNKQKKNAKKKAALAKKKAPKKKKK
HHHHHCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLP
CCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHCCCCEEEECCCCCCCHHHHHHH
ALQHLDDFPRREPGPARILILTPTRELAIQVADEARQLAKYTRHKVFTITGGISYQDHAD
HHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCH
ILATTQDIVVATPGRLMEYIEAERFDCRAIETLILDEADRMLDMGFGPVVDRLSKECRWR
HHEECCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
KQTFLFSATLEGRGVEGFTADLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKN
HHHEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTEQAERSIVFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVL
HHHHHHHCCEEEEEHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLIEAHDQPMMER
EEECHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHH
VGRYIKEDDIIKERFIEGLKPKHKKPVFKNKQKKNAKKKAALAKKKAPKKKKK
HHHHHCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]