Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is holA [H]
Identifier: 57651979
GI number: 57651979
Start: 1674362
End: 1675336
Strand: Reverse
Name: holA [H]
Synonym: SACOL1643
Alternate gene names: 57651979
Gene position: 1675336-1674362 (Counterclockwise)
Preceding gene: 57651980
Following gene: 57651977
Centisome position: 59.63
GC content: 26.87
Gene sequence:
>975_bases ATGAGCGACAATATTGTAGCTATTTATGGAGATGTGCCTGAATTGGTTGAAAAACAAAGTGCAGAAATCATATCACAATT TTTGAAAAGTGATAGAGATGACTTTAACTTTGTGAAATATAATTTATACGAAACAGAGATTGCACCAATTGTTGAAGAAA CATTAACATTGCCTTTCTTTTCAGATAAAAAAGCAATTTTGGTTAAAAATGCATATATATTTACAGGTGAAAAAGCGCCA AAAGATATGGCTCATAATGTAGATCAATTAATAGAATTTATTGAAAAATATGATGGCGAAAATTTGATTGTCTTTGAGAT ATATCAAAATAAACTTGATGAAAGAAAAAAGTTAACTAAAACTCTAAAAAAGCATGCAAGGCTTAAAAAAATAGAGCAAA TGTCTGAAGAAGAAATAAAAAAATGGATTCAAAGTAAATTAAATGAGAATTTCAAAGATATCAAAAGAGATGCATTAGAT TTATTTATTGAGTTGACAGGTATTAACTTTAATATTGTCTCACAAGAGATAGAAAAGTTGATTTTATTTTTAGGCGATAG ACCAACAATTAATAAGCAGGATGTTAACCAAATTATTAATAGAAGTTTAGAGCAAAATGTATTTTTACTGACTGAATACA TTCAGAAAAGAAAGAAAGAACAAGCAATTCATTTAGTAAAAGATTTAATAACTATGAAAGAAGAACCAATTAAATTACTT GCACTAATTACAAGTAATTACCGATTATTTTATCAATGTAAGATTCTGAGTCAAAAAGGATATAGTGGACAGCAAATTGC TAAAACAATAGGAGTACATCCATACAGAGTAAAATTAGCGTTAGGACAAGTAAGACATTATCAACTTGATGAATTATTGA ATATTATAGATGCTTGTGCGGAAACTGATTATAAACTTAAATCATCATATATGGATAAACAGTTAATACTGGAATTATTC ATTCTATCTTTATAA
Upstream 100 bases:
>100_bases TAAAAGTTGATTCAAGCTCTTATGGAAATGCAAGTGGTTTATAGATACAGAAACATGATATAATCTATTGATGTGTCAAA CGAATGAAAGGGTGTAATGA
Downstream 100 bases:
>100_bases AAAATAAAAGTTCAAGCATGCGCTTGAACTTTTATTTAAAAAGATTATTTATTTGCAGTCATTAATTGTGATTTAATACG GTCAGCTTTGTTTGAATGTA
Product: DNA polymerase III subunit delta
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAP KDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALD LFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLL ALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACAETDYKLKSSYMDKQLILELF ILSL
Sequences:
>Translated_324_residues MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAP KDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALD LFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLL ALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACAETDYKLKSSYMDKQLILELF ILSL >Mature_323_residues SDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPK DMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDL FIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLA LITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACAETDYKLKSSYMDKQLILELFI LSL
Specific function: Unknown
COG id: COG1466
COG function: function code L; DNA polymerase III, delta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008921 - InterPro: IPR010372 - InterPro: IPR005790 [H]
Pfam domain/function: PF06144 DNA_pol3_delta [H]
EC number: NA
Molecular weight: Translated: 37937; Mature: 37805
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFF CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCC SDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTK CCCCEEEEEEEEEEECCCCCHHHHHCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHH TLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHH ILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLL HHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH ALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACA HHHHCCCEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH ETDYKLKSSYMDKQLILELFILSL CCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFF CCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCC SDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTK CCCCEEEEEEEEEEECCCCCHHHHHCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHH TLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHH ILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLL HHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH ALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIIDACA HHHHCCCEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH ETDYKLKSSYMDKQLILELFILSL CCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]