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The map label for this gene is ssb1

Identifier: 57651266

GI number: 57651266

Start: 363651

End: 364070

Strand: Direct

Name: ssb1

Synonym: SACOL0339

Alternate gene names: 57651266

Gene position: 363651-364070 (Clockwise)

Preceding gene: 57651265

Following gene: 57651267

Centisome position: 12.94

GC content: 39.52

Gene sequence:

>420_bases
ATGTTAAACAGAACAGTATTAGTAGGGCGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACAAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTAT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCACTGGCAGGTGTAGACGGGCGATTACAAACACGC
AGTTACGATAACAAAGAAGGGCGACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACAAACAGAATAACCAACAACACAACGGACAAACTCAAACTGGTAATAATCCGTTCGACAATACCGAAGAAGACT
TTTCTGACTTACCGTTCTGA

Upstream 100 bases:

>100_bases
AAATCTCTAACATTAATAAATTGAGTCAAAAACAAATCGCAGAAGCACGCCAAAAATTAGATGCGGGATTAAAACAATTG
GATAGTGAGGAGAAACAATA

Downstream 100 bases:

>100_bases
TTGGAATGATTAAATGCCAAAAATTACTAGTTATATCACTCAAGACGACGGCACAACAACAGTTGTCATCTCGGGTGTCG
AATTAGGCAATAAAGAAACA

Product: prophage L54a, single-stranded DNA binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF

Sequences:

>Translated_139_residues
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF
>Mature_139_residues
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQTQTGNNPFDNTEEDFSDLPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair. This specific ssb is encoded in the L54a prophage and may be involved in phage replication

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain

Homologues:

Organism=Escherichia coli, GI1790494, Length=98, Percent_Identity=39.7959183673469, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SSBP_STAAC (Q5HJ26)

Other databases:

- EMBL:   CP000046
- RefSeq:   YP_185231.1
- ProteinModelPortal:   Q5HJ26
- SMR:   Q5HJ26
- STRING:   Q5HJ26
- EnsemblBacteria:   EBSTAT00000010368
- GeneID:   3236901
- GenomeReviews:   CP000046_GR
- KEGG:   sac:SACOL0339
- TIGR:   SACOL0339
- eggNOG:   COG0629
- GeneTree:   EBGT00050000024614
- HOGENOM:   HBG755544
- OMA:   RENDQDA
- ProtClustDB:   CLSK884960
- BioCyc:   SAUR93062:SACOL0339-MONOMER
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344
- Gene3D:   G3DSA:2.40.50.140
- PANTHER:   PTHR10302
- TIGRFAMs:   TIGR00621

Pfam domain/function: PF00436 SSB; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 15608; Mature: 15608

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAEN
CCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECEECCCCCCCCCCEEEEEEECCHHHH
VKNYLSKGSLAGVDGRLQTRSYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQT
HHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCC
QTGNNPFDNTEEDFSDLPF
CCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAEN
CCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECEECCCCCCCCCCEEEEEEECCHHHH
VKNYLSKGSLAGVDGRLQTRSYDNKEGRRVFVTEVVADSVQFLEPKNNNKQNNQQHNGQT
HHHHHHCCCCCCCCCEEECCCCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCC
QTGNNPFDNTEEDFSDLPF
CCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA