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The map label for this gene is nirD [H]

Identifier: 57650942

GI number: 57650942

Start: 2458192

End: 2458506

Strand: Reverse

Name: nirD [H]

Synonym: SACOL2397

Alternate gene names: 57650942

Gene position: 2458506-2458192 (Counterclockwise)

Preceding gene: 57650943

Following gene: 57650941

Centisome position: 87.51

GC content: 36.19

Gene sequence:

>315_bases
ATGGAAACAAAAGAAAAAATTAAAGTGACAACTATAGATGAATTAACACCCCTAATTGGAAAAAAGGTTATTGTCAAAGG
CAAAGAGGTAGGGTTGTTTTTAACAGAAAGTGGCAAAATTCATGCGATTCACAATATCTGTCCACACAAACAAGGACCAT
TGTCTGAAGGGACAGTGAGTGGGGAATATGTATTTTGCCCGCTCCACGATCAAAAAATTGATTTAAATACAGGTATTGTT
CAAGAACCTGATGAAGGTTGTGTAGATGTTTATGAGGTAGAAGTTACAGACGGGAACGTATATATATGTCTGTAG

Upstream 100 bases:

>100_bases
CATTATGGATGCTAAAAAAGCAGTCGAAGCTGAACCTTGGGAAGCAATAACTAGCAATGCGCAAGCACGTAGAATTTTTG
AAGTGGAGAAGGTGTAATAC

Downstream 100 bases:

>100_bases
AGGAATATGGCAAGGTTTACTTGATAGGTGCGGGTCCAGGTAATCCGAATTATTTGACGAAAAAGGCTGAGCGTTTAATA
CGTGAAGCGGATGTCATTCT

Product: nitrite reductase [NAD(P)H], small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGKIHAIHNICPHKQGPLSEGTVSGEYVFCPLHDQKIDLNTGIV
QEPDEGCVDVYEVEVTDGNVYICL

Sequences:

>Translated_104_residues
METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGKIHAIHNICPHKQGPLSEGTVSGEYVFCPLHDQKIDLNTGIV
QEPDEGCVDVYEVEVTDGNVYICL
>Mature_104_residues
METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGKIHAIHNICPHKQGPLSEGTVSGEYVFCPLHDQKIDLNTGIV
QEPDEGCVDVYEVEVTDGNVYICL

Specific function: Required for nitrite assimilation. Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 11437; Mature: 11437

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGKIHAIHNICPHKQGPLSEGTVS
CCCCCEEEEEEHHHHCHHCCCEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
GEYVFCPLHDQKIDLNTGIVQEPDEGCVDVYEVEVTDGNVYICL
CCEEEEECCCCEEECCCCCEECCCCCCEEEEEEEEECCCEEEEC
>Mature Secondary Structure
METKEKIKVTTIDELTPLIGKKVIVKGKEVGLFLTESGKIHAIHNICPHKQGPLSEGTVS
CCCCCEEEEEEHHHHCHHCCCEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
GEYVFCPLHDQKIDLNTGIVQEPDEGCVDVYEVEVTDGNVYICL
CCEEEEECCCCEEECCCCCEECCCCCCEEEEEEEEECCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7868621; 8969502; 9384377 [H]