Definition | Staphylococcus aureus subsp. aureus COL chromosome, complete genome. |
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Accession | NC_002951 |
Length | 2,809,422 |
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The map label for this gene is icd
Identifier: 57650565
GI number: 57650565
Start: 1775454
End: 1776722
Strand: Reverse
Name: icd
Synonym: SACOL1741
Alternate gene names: 57650565
Gene position: 1776722-1775454 (Counterclockwise)
Preceding gene: 57650566
Following gene: 57650564
Centisome position: 63.24
GC content: 34.99
Gene sequence:
>1269_bases ATGACTGCAGAAAAAATTACTCAAGGAACTGAAGGATTAAACGTACCTAATGAACCAATTATCCCATTTATTATCGGTGA TGGAATTGGACCGGATATTTGGAAGGCAGCAAGCCGAGTTATAGATGCTGCTGTTGAGAAAGCCTATAATGGCGAAAAAC GCATTGAATGGAAAGAAGTGCTAGCTGGCCAAAAAGCATTTGATACAACTGGTGAATGGTTACCTCAAGAAACACTTGAT ACAATTAAAGAATATTTAATTGCTGTTAAAGGACCTTTAACAACACCAATTGGTGGTGGTATTAGATCATTAAATGTGGC TTTACGCCAAGAATTAGATTTATTTACTTGCTTAAGACCGGTACGTTGGTTTAAAGGAGTACCATCACCTGTTAAACGTC CACAAGATGTTGATATGGTTATTTTCCGTGAAAATACTGAAGACATTTATGCTGGTATTGAATTTAAAGAAGGTACAACA GAAGTTAAAAAGGTAATTGACTTCTTACAAAACGAAATGGGTGCGACAAACATTCGATTCCCAGAAACTTCAGGTATTGG TATTAAACCAGTTTCTAAAGAAGGAACTGAGCGATTAGTTAGAGCAGCTATACAATATGCTATCGATAATAACCGTAAAT CAGTTACTTTAGTTCATAAAGGTAATATTATGAAATTTACAGAAGGCTCATTTAAGCAGTGGGGTTACGATTTAGCATTA TCTGAATTTGGTGATCAAGTATTCACTTGGCAACAATATGACGAAATTGTTGAAAATGAAGGCAGAGATGCTGCTAATGC TGCTCAAGAAAAAGCTGAAAAAGAAGGCAAGATTATCATTAAAGATTCTATTGCTGACATTTTCTTACAACAAATTTTAA CTCGTCCAGCTGAGCATGATGTTGTAGCAACTATGAACTTGAATGGTGACTATATTTCAGATGCTTTAGCTGCACAAGTT GGTGGTATTGGTATTGCGCCAGGTGCAAACATTAATTATGAAACAGGTCATGCTATTTTTGAAGCAACACATGGTACAGC TCCAAAATATGCAGGTTTAAATAAAGTGAATCCATCTTCAGTAATTTTAAGTTCTGTATTAATGTTAGAACATTTAGGAT GGCAAGAAGCGGCAGATAAGATTACAGATTCAATTGAAGATACAATTGCTTCAAAAGTTGTTACTTATGACTTTGCCCGT TTAATGGATGGTGCTGAAGAAGTTTCTACATCAGCATTTGCAGATGAATTGATTAAAAATTTAAAATAA
Upstream 100 bases:
>100_bases ATATATTGGCGAAACGAATCGTAAGTATATCCCGCTTGAAGAAAGAAAATAATCAATACAAATTAAAAATGAAGATGTAA AATTTGGAGGTAAAATAACT
Downstream 100 bases:
>100_bases GCAAAATAAAATTAGGTGAGTCTAGCAACTTTAATTGCTAGGTTCGCCTTTTTAAATGAATTGAAGTTGGCAACAGGATA GAAATAATAAAGAGTCACCA
Product: isocitrate dehydrogenase
Products: NA
Alternate protein names: IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLD TIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTT EVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQV GGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFAR LMDGAEEVSTSAFADELIKNLK
Sequences:
>Translated_422_residues MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLD TIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTT EVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQV GGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFAR LMDGAEEVSTSAFADELIKNLK >Mature_421_residues TAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDT IKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTE VKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLALS EFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVG GIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARL MDGAEEVSTSAFADELIKNLK
Specific function: Unknown
COG id: COG0538
COG function: function code C; Isocitrate dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the isocitrate and isopropylmalate dehydrogenases family
Homologues:
Organism=Homo sapiens, GI5031777, Length=413, Percent_Identity=31.4769975786925, Blast_Score=175, Evalue=7e-44, Organism=Homo sapiens, GI28178816, Length=368, Percent_Identity=27.7173913043478, Blast_Score=125, Evalue=1e-28, Organism=Homo sapiens, GI28178821, Length=368, Percent_Identity=27.7173913043478, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI4758582, Length=368, Percent_Identity=27.7173913043478, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI28178838, Length=368, Percent_Identity=27.7173913043478, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI28178819, Length=199, Percent_Identity=30.1507537688442, Blast_Score=82, Evalue=6e-16, Organism=Escherichia coli, GI1787381, Length=422, Percent_Identity=62.7962085308057, Blast_Score=527, Evalue=1e-151, Organism=Escherichia coli, GI1788101, Length=413, Percent_Identity=30.7506053268765, Blast_Score=132, Evalue=6e-32, Organism=Escherichia coli, GI87081683, Length=411, Percent_Identity=27.2506082725061, Blast_Score=101, Evalue=7e-23, Organism=Caenorhabditis elegans, GI71986051, Length=371, Percent_Identity=30.9973045822102, Blast_Score=167, Evalue=1e-41, Organism=Caenorhabditis elegans, GI25144293, Length=378, Percent_Identity=30.4232804232804, Blast_Score=132, Evalue=4e-31, Organism=Caenorhabditis elegans, GI17505779, Length=362, Percent_Identity=29.0055248618785, Blast_Score=106, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6324709, Length=404, Percent_Identity=31.4356435643564, Blast_Score=177, Evalue=2e-45, Organism=Saccharomyces cerevisiae, GI6322097, Length=376, Percent_Identity=30.8510638297872, Blast_Score=143, Evalue=7e-35, Organism=Saccharomyces cerevisiae, GI6324291, Length=403, Percent_Identity=29.0322580645161, Blast_Score=136, Evalue=6e-33, Organism=Drosophila melanogaster, GI24643268, Length=402, Percent_Identity=32.3383084577114, Blast_Score=190, Evalue=1e-48, Organism=Drosophila melanogaster, GI24643270, Length=409, Percent_Identity=32.518337408313, Blast_Score=190, Evalue=1e-48, Organism=Drosophila melanogaster, GI24661184, Length=403, Percent_Identity=31.7617866004963, Blast_Score=183, Evalue=2e-46, Organism=Drosophila melanogaster, GI161078635, Length=320, Percent_Identity=30.3125, Blast_Score=122, Evalue=4e-28, Organism=Drosophila melanogaster, GI161078633, Length=320, Percent_Identity=30.3125, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI24650122, Length=320, Percent_Identity=30.3125, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI161078637, Length=320, Percent_Identity=30.3125, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI161078639, Length=320, Percent_Identity=30.3125, Blast_Score=122, Evalue=6e-28, Organism=Drosophila melanogaster, GI281362242, Length=413, Percent_Identity=25.6658595641646, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI24648872, Length=413, Percent_Identity=25.6658595641646, Blast_Score=96, Evalue=4e-20,
Paralogues:
None
Copy number: 8180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1480 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): IDH_STAAC (Q5HF79)
Other databases:
- EMBL: CP000046 - RefSeq: YP_186578.1 - ProteinModelPortal: Q5HF79 - SMR: Q5HF79 - STRING: Q5HF79 - EnsemblBacteria: EBSTAT00000010752 - GeneID: 3236289 - GenomeReviews: CP000046_GR - KEGG: sac:SACOL1741 - TIGR: SACOL1741 - eggNOG: COG0538 - GeneTree: EBGT00050000023966 - HOGENOM: HBG518924 - OMA: RDWGYEL - ProtClustDB: PRK07006 - BioCyc: SAUR93062:SACOL1741-MONOMER - InterPro: IPR019818 - InterPro: IPR001804 - InterPro: IPR004439 - Gene3D: G3DSA:3.40.718.10 - PANTHER: PTHR11835 - PANTHER: PTHR11835:SF1 - TIGRFAMs: TIGR00183
Pfam domain/function: PF00180 Iso_dh
EC number: =1.1.1.42
Molecular weight: Translated: 46423; Mature: 46292
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS00470 IDH_IMDH
Important sites: BINDING 94-94 BINDING 103-103 BINDING 105-105 BINDING 109-109 BINDING 119-119 BINDING 143-143 BINDING 357-357 BINDING 396-396 BINDING 400-400
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV CCHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP HCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF HHHHCCCCCHHCCCCCCCEEEEECCCCHHEECCEECCCHHHHHHHHHHHHHHCCCCCCCC PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCHHHHCHHHHH SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD HHHCCHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCC VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS EEEEEECCCHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHH VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LK CC >Mature Secondary Structure TAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV CHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP HCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRF HHHHCCCCCHHCCCCCCCEEEEECCCCHHEECCEECCCHHHHHHHHHHHHHHCCCCCCCC PETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLAL CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCHHHHCHHHHH SEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHD HHHCCHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCC VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS EEEEEECCCHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHH VILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKN HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA