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The map label for this gene is rpoZ

Identifier: 57238145

GI number: 57238145

Start: 1327359

End: 1327583

Strand: Reverse

Name: rpoZ

Synonym: CJE1409

Alternate gene names: 57238145

Gene position: 1327583-1327359 (Counterclockwise)

Preceding gene: 57238146

Following gene: 57238144

Centisome position: 74.67

GC content: 33.33

Gene sequence:

>225_bases
ATGGATAAAAGAATAGAAGAAGTAGCGGCAAAAGCTTTGGAAAAAATGGGTAATGATAGATATCGCCTTTCTTTAGTGGT
AGCAAAAAGAGCGGAACAATTGGCAAATGGAGCAACCCCTTTGGTAGACTTTGATAAAAATAAAAATAAACTTGCAGATA
TAGCTTTATATGAAATTGCAGAAAATAAAATCACTTTAGAGGGTTTAGTTGAAACCAATCGATGA

Upstream 100 bases:

>100_bases
ATTGTGGTTTGTAATATGTTTGAAGAGGGTAATTTACTTAAAATCATACAAGGTGATACTAGCCTTTGTTCAATCGTTAA
AAATAATTAAGGAGAAAATT

Downstream 100 bases:

>100_bases
AGAATTATTGCTTGAACAATTAATCGATAATGTAAAAAATTGTAAAGATTTAGAAGCTGCTAAGGCTTTGCTTTTCGAAA
TTTGTGGCCATGATGCTATT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 74; Mature: 74

Protein sequence:

>74_residues
MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDFDKNKNKLADIALYEIAENKITLEGLVETNR

Sequences:

>Translated_74_residues
MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDFDKNKNKLADIALYEIAENKITLEGLVETNR
>Mature_74_residues
MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDFDKNKNKLADIALYEIAENKITLEGLVETNR

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_CAMJ8 (A8FMX9)

Other databases:

- EMBL:   CP000814
- RefSeq:   YP_001482793.1
- STRING:   A8FMX9
- GeneID:   5617390
- GenomeReviews:   CP000814_GR
- KEGG:   cju:C8J_1217
- eggNOG:   COG1758
- HOGENOM:   HBG321313
- OMA:   MRTEQIT
- ProtClustDB:   PRK00392
- BioCyc:   CJEJ407148:C8J_1217-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 8318; Mature: 8318

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDFDKNKNKLADIALYEIA
CCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHH
ENKITLEGLVETNR
CCEEEEEEEEECCC
>Mature Secondary Structure
MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDFDKNKNKLADIALYEIA
CCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHH
ENKITLEGLVETNR
CCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA