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The map label for this gene is psd [H]

Identifier: 57237997

GI number: 57237997

Start: 1173557

End: 1174174

Strand: Reverse

Name: psd [H]

Synonym: CJE1258

Alternate gene names: 57237997

Gene position: 1174174-1173557 (Counterclockwise)

Preceding gene: 57237998

Following gene: 57237996

Centisome position: 66.05

GC content: 27.83

Gene sequence:

>618_bases
ATGAAAGATTTTATTGCAAAAGATGGATATTTAAGTCTTATTATTTTAAGCTTAATTTTTATTTTTGTGTGGATTTTTTA
TTCTTTTTCCATCTTGCTATTAGTATTAATTGTAATTTGTATTTTTCTTTTTAGAGCGCCCAAAAGAGAACTTGTTTGTA
GTGATGAAAAAGCTATTTTTGCACCTATGGATGGTAGGGTTACTAAAATAGAAAATATTCATCATAAAGATTTGGGTGAA
TGTGTTGAAATTACTATTAAAAATGCTCTTTATGATGCTGGGAATTTTAATACACCTTTTGCAATGTCTATAATAGATAT
TCGTTTACGACATGGGCTTTTTTTGTGCAGTGAATTAAAATCTGTAAAAATGATGAATGAAAGAGCTTTTATTTTGGCAA
AAGTTAAAGAGAATAAAACGATAGCCTTGCGAATCTATGCAGGTTCTTTTGATAGAAAATTAAAGCTTGATAATATTTCT
CATGATTTAAAAGCAGGAGATAGAATGGGTTTTTTAATTAATGGCTCTATAAGTTTACTTTTACCAAAAGATACTAGAAT
TCATATAGGCTTAAATGATGAAATTAAAGCAGGTTCATTGCTAGGCTATTTTGCGTAA

Upstream 100 bases:

>100_bases
ATAAAGTGCGCGAGATTATTAAAGAGTTTGAGGATCAAAATAGTCTACCAACTCGTTTACAAGAACTCGAAGAAGTTAAA
ACTGAAGTTAAAATAGAAGA

Downstream 100 bases:

>100_bases
GGAAAAATAATGAATAACAGACCGCAACTAATTTATATTTTACCCAATCTTTTTACAGCTGCTTCAGCTTTTTTAGGGGT
TATTTCTATTATAGCTTCAA

Product: phosphatidylserine decarboxylase-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLVLIVICIFLFRAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGE
CVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELKSVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA

Sequences:

>Translated_205_residues
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLVLIVICIFLFRAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGE
CVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELKSVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA
>Mature_205_residues
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLVLIVICIFLFRAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGE
CVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELKSVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 23262; Mature: 23262

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLVLIVICIFLFRAPKRELVCSDEKAIF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEE
APMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELK
ECCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNISHDLKAGDRMGFLINGSISLL
HHHHHCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCCHHCCCCCEEEEEECEEEEE
LPKDTRIHIGLNDEIKAGSLLGYFA
ECCCCEEEEECCCCCCCCCEEEECC
>Mature Secondary Structure
MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLVLIVICIFLFRAPKRELVCSDEKAIF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEE
APMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAMSIIDIRLRHGLFLCSELK
ECCCCCEEEECCCCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNISHDLKAGDRMGFLINGSISLL
HHHHHCCCEEEEEEECCCCEEEEEEEECCCCCEEEECCCCCHHCCCCCEEEEEECEEEEE
LPKDTRIHIGLNDEIKAGSLLGYFA
ECCCCEEEEECCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA