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The map label for this gene is yohD [H]

Identifier: 57237756

GI number: 57237756

Start: 939806

End: 940402

Strand: Direct

Name: yohD [H]

Synonym: CJE1006

Alternate gene names: 57237756

Gene position: 939806-940402 (Clockwise)

Preceding gene: 57237755

Following gene: 57237757

Centisome position: 52.86

GC content: 29.82

Gene sequence:

>597_bases
ATGGAAGAATTTTTAAAAAATTTACTTTACCAATACAAAGATCTAGCTTATATTATTATTTTTTTATGGTGCATTTTAGA
AGGAGAGTTAGCTTTAATTTTAGCTGGTATTTTTGCCCATCAAGGACATGTAAATTTAGGCTTTGTTATATTTATAGCAG
GTCTTGGCGGTTTTGTAGGCGATCAAATTTACTTCTATATAGGAAGATATAATAAATGCTACATACAAAAAAAATTAAAA
ACTCAAAGGCGTAAATTTGCAGTAGCACACCTACTTTTACAACGTTTTGGTTGGCCTATTATTTTTATACAACGCTATAT
GTATGGCTTTAGAACCATTATACCTATGAGTATAGGAATCACGCGTTATAGTGCAAAAAAATTTGCTATTATCAATCTTT
TTAGTGCTTGGGTTTGGGCATCAATCACTATACTTTTAGCTTGGTATTTTGGAGAACAAATTTGGAAGATGGTGACTTGG
GCTGAAGAACATTGGTATTATGCAGCCATTATTATTATAGCTTTTTTATCCCTTTTATTATTTGGTTTTAAACAAATGGA
AAAAGCTATACTTAAAGATAAAAGGAAAAAATCATGA

Upstream 100 bases:

>100_bases
TTTTTTAATGAATCTTAAAGATTTAAATGGAGCAAATAAACTTGAAAAACTTACTTCAGTTTATAGTGTTTTAGAAATTT
AAAACTATAGAAAGGTACAA

Downstream 100 bases:

>100_bases
AATTTGAATTAAACGATAAAAAACTAGATGCTATAAAAGCAGACTTTGAACTTGTTTTTATACAGGATAAAAATTTAAAA
ATTTTTAACAAAGAAAAAGA

Product: DedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHVNLGFVIFIAGLGGFVGDQIYFYIGRYNKCYIQKKLK
TQRRKFAVAHLLLQRFGWPIIFIQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS

Sequences:

>Translated_198_residues
MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHVNLGFVIFIAGLGGFVGDQIYFYIGRYNKCYIQKKLK
TQRRKFAVAHLLLQRFGWPIIFIQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS
>Mature_198_residues
MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHVNLGFVIFIAGLGGFVGDQIYFYIGRYNKCYIQKKLK
TQRRKFAVAHLLLQRFGWPIIFIQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=163, Percent_Identity=29.4478527607362, Blast_Score=85, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23425; Mature: 23425

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHVNLGFVIFIAGLGGFVG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
DQIYFYIGRYNKCYIQKKLKTQRRKFAVAHLLLQRFGWPIIFIQRYMYGFRTIIPMSIGI
HHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCH
TRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTWAEEHWYYAAIIIIAFLSLLL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGFKQMEKAILKDKRKKS
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHVNLGFVIFIAGLGGFVG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
DQIYFYIGRYNKCYIQKKLKTQRRKFAVAHLLLQRFGWPIIFIQRYMYGFRTIIPMSIGI
HHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCH
TRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTWAEEHWYYAAIIIIAFLSLLL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGFKQMEKAILKDKRKKS
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]