Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 55980761

GI number: 55980761

Start: 758243

End: 758776

Strand: Reverse

Name: scpB [H]

Synonym: TTHA0792

Alternate gene names: 55980761

Gene position: 758776-758243 (Counterclockwise)

Preceding gene: 55980762

Following gene: 55980759

Centisome position: 41.02

GC content: 72.28

Gene sequence:

>534_bases
ATGGAGGAAGCCCCGAGCCTCAAAACCCTCCTCCTCGCCGTCCTCTTCGCCGCGGGAAGGCCCGTGGCCCTCAAGGAGCT
TAGGGCCCTGGGCCACCCCGAGGAGGCCGTCCTCCGCGCCCTCAAGGCCCTGGAGCGGGACCTCGAGGCCGGCCACCTGG
GCGTGGCCCTGGAGCGGGTGGCGGGGGGGTGGCGGCTCGTGGTCCATCCCAAGGCCTTGGAGGCGGTGGAGCGCGTCCTT
AAGCCCTCCCCGCCCAGGCTCTCCCGGGCGGCCCTCGAGGTCCTGGCCCTCGTGGCCTACCACCAGCCCGTGACCCGGGC
GGAGCTTGAGGCCATGCGGGGCAAGGGGGTGGAAGGGGTCCTGGAAAGCCTCCTGGAGCGGGGCCTTGTCCGGGTGGTGG
GGGAGAAGGAAGCCCCCGGCCGCCCCAAGCTTTACGGGACCACGGAGCGCTTTTTGGAGGTCTTCGGCCTGGAGAGCCTA
GAAGACCTCCCCCCGCTCAGGGAGGACGGCCCACCCCTCCTCCTCCGCGGCTAG

Upstream 100 bases:

>100_bases
GGGAGGACTTGCCTCCAGCGTGGTGGACCTCCGCACCGGGGAGGTCCTGCGGGAAGGGGCGATCCCCAAGGAGGCCCTTC
TCGCCCACCTCCGGTAGGCC

Downstream 100 bases:

>100_bases
GGCCTCCCGGGCGGGGACGGGGAGGGGGCTATAAAGCTCGTTCTCCCGAACGAAGGCGAGGAGGAAGCGGGAGAGGAGGC
GCATCTGGCTTTTGTGGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MEEAPSLKTLLLAVLFAAGRPVALKELRALGHPEEAVLRALKALERDLEAGHLGVALERVAGGWRLVVHPKALEAVERVL
KPSPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLERGLVRVVGEKEAPGRPKLYGTTERFLEVFGLESL
EDLPPLREDGPPLLLRG

Sequences:

>Translated_177_residues
MEEAPSLKTLLLAVLFAAGRPVALKELRALGHPEEAVLRALKALERDLEAGHLGVALERVAGGWRLVVHPKALEAVERVL
KPSPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLERGLVRVVGEKEAPGRPKLYGTTERFLEVFGLESL
EDLPPLREDGPPLLLRG
>Mature_177_residues
MEEAPSLKTLLLAVLFAAGRPVALKELRALGHPEEAVLRALKALERDLEAGHLGVALERVAGGWRLVVHPKALEAVERVL
KPSPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGVLESLLERGLVRVVGEKEAPGRPKLYGTTERFLEVFGLESL
EDLPPLREDGPPLLLRG

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 19257; Mature: 19257

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEAPSLKTLLLAVLFAAGRPVALKELRALGHPEEAVLRALKALERDLEAGHLGVALERV
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
AGGWRLVVHPKALEAVERVLKPSPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGV
CCCCEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHH
LESLLERGLVRVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPLREDGPPLLLRG
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
>Mature Secondary Structure
MEEAPSLKTLLLAVLFAAGRPVALKELRALGHPEEAVLRALKALERDLEAGHLGVALERV
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
AGGWRLVVHPKALEAVERVLKPSPPRLSRAALEVLALVAYHQPVTRAELEAMRGKGVEGV
CCCCEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHH
LESLLERGLVRVVGEKEAPGRPKLYGTTERFLEVFGLESLEDLPPLREDGPPLLLRG
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA