Click here to switch to the map view.

The map label for this gene is ideR [H]

Identifier: 55980723

GI number: 55980723

Start: 720304

End: 720963

Strand: Reverse

Name: ideR [H]

Synonym: TTHA0754

Alternate gene names: 55980723

Gene position: 720963-720304 (Counterclockwise)

Preceding gene: 55980726

Following gene: 55980722

Centisome position: 38.98

GC content: 71.97

Gene sequence:

>660_bases
ATGGCGAGGCCGCCCCTCACCGAGGCCCAGGAGGATTACCTAAAGCACCTCTTTCTTCTGGAGGAGGCCCTCGGGGGGCC
CGTCCCCACGCAGGCCCTGGCGGAGCGACTCTCGGTCAAGCCGCCCTCCGTGACGGAGATGCTGAAGAAGCTCAAGGCCC
TTGGCCTCCTGGAGCACGAGCCCTACCGGGGGGCCCGGCTCACGGAGCGGGGGAGGAAGGTGGCCCTCGAGGTCCTGCGC
CACCACCGCCTCCTCGAGGCCTACCTCCACCAGGCCCTGGGCTACGGCTGGGAGGAGGTCCACCAGGAGGCGGAAAGGCT
GGAGCACGTGATCAGCGAGGACCTGGAGGAAAGGATCGCCGAGTACCTGGGCCACCCCCCCTTTGACCCCCACGGGGACC
CCATCCCCACCAAGGACCTGACCCTTCCCTCCTCCAAGGCCCTCCCCCTCACCGAGGCCCCCCTGGGGCGGGCCCGGGTG
GCCCGCGCCCTGGCCCAGGACCGGGGCACCCTGAACCTCCTCGCCCGGCTCGGCCTGGTGCCGGGAAAGCCCCTCCGGAT
CCTGGAGAGGGGCGAGGGGGTGCGGGTGGAGGTGGAGGGGGAGGTCTACCTCCTGCCCCGGGCCCTCGCCCAGGCGGTGG
GGGTGGAGCCCTTAGGCTAG

Upstream 100 bases:

>100_bases
TGGCTCGTGGCCACCGCGCCCCGCCTTCCCAAGACCACGTGGCGGCGGGAGGGGTAGGGGTAGTGGGTGAGGTCCATGCT
TCCATGCTACCTTTAGGGGG

Downstream 100 bases:

>100_bases
GGGCATGCGCCTCGTGGACCTGAGGAGCGACACCCTCACCCGCCCCACCCCGGCCATGCGCAAGGCCATGGCGGAGGCGG
AGGTGGGGGACGACGCCTAC

Product: transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MARPPLTEAQEDYLKHLFLLEEALGGPVPTQALAERLSVKPPSVTEMLKKLKALGLLEHEPYRGARLTERGRKVALEVLR
HHRLLEAYLHQALGYGWEEVHQEAERLEHVISEDLEERIAEYLGHPPFDPHGDPIPTKDLTLPSSKALPLTEAPLGRARV
ARALAQDRGTLNLLARLGLVPGKPLRILERGEGVRVEVEGEVYLLPRALAQAVGVEPLG

Sequences:

>Translated_219_residues
MARPPLTEAQEDYLKHLFLLEEALGGPVPTQALAERLSVKPPSVTEMLKKLKALGLLEHEPYRGARLTERGRKVALEVLR
HHRLLEAYLHQALGYGWEEVHQEAERLEHVISEDLEERIAEYLGHPPFDPHGDPIPTKDLTLPSSKALPLTEAPLGRARV
ARALAQDRGTLNLLARLGLVPGKPLRILERGEGVRVEVEGEVYLLPRALAQAVGVEPLG
>Mature_218_residues
ARPPLTEAQEDYLKHLFLLEEALGGPVPTQALAERLSVKPPSVTEMLKKLKALGLLEHEPYRGARLTERGRKVALEVLRH
HRLLEAYLHQALGYGWEEVHQEAERLEHVISEDLEERIAEYLGHPPFDPHGDPIPTKDLTLPSSKALPLTEAPLGRARVA
RALAQDRGTLNLLARLGLVPGKPLRILERGEGVRVEVEGEVYLLPRALAQAVGVEPLG

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 24301; Mature: 24170

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50944 HTH_DTXR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPPLTEAQEDYLKHLFLLEEALGGPVPTQALAERLSVKPPSVTEMLKKLKALGLLEHE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
PYRGARLTERGRKVALEVLRHHRLLEAYLHQALGYGWEEVHQEAERLEHVISEDLEERIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EYLGHPPFDPHGDPIPTKDLTLPSSKALPLTEAPLGRARVARALAQDRGTLNLLARLGLV
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCC
PGKPLRILERGEGVRVEVEGEVYLLPRALAQAVGVEPLG
CCCCHHHHHCCCCCEEEECCCEEEHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ARPPLTEAQEDYLKHLFLLEEALGGPVPTQALAERLSVKPPSVTEMLKKLKALGLLEHE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
PYRGARLTERGRKVALEVLRHHRLLEAYLHQALGYGWEEVHQEAERLEHVISEDLEERIA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EYLGHPPFDPHGDPIPTKDLTLPSSKALPLTEAPLGRARVARALAQDRGTLNLLARLGLV
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCC
PGKPLRILERGEGVRVEVEGEVYLLPRALAQAVGVEPLG
CCCCHHHHHCCCCCEEEECCCEEEHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]