| Definition | Legionella pneumophila str. Lens, complete genome. |
|---|---|
| Accession | NC_006369 |
| Length | 3,345,687 |
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The map label for this gene is amiC [H]
Identifier: 54295539
GI number: 54295539
Start: 2997964
End: 2999394
Strand: Reverse
Name: amiC [H]
Synonym: lpl2626
Alternate gene names: 54295539
Gene position: 2999394-2997964 (Counterclockwise)
Preceding gene: 54295540
Following gene: 54295538
Centisome position: 89.65
GC content: 41.3
Gene sequence:
>1431_bases ATGATGATGCGAGCGTGGGTCTTAAGTCTGTTATTATATCTACCAAGTTCTTTTGCTGTATTTTCTGCACAATTAAAGAA TATTACAGTTTCTCAGCAACCAACCATGACGTCTCTTTATCTTTCTATACAAGGTTCATTTACCCATAAGCTATTTACCT TAAGTCAGCCCAATCGTGTAGTTTTAGACTTAAGTGATACACAATTAGCCGTCAATATCAGCCAATTGGGTTTAATCAAT TCGCTTATTCAGCAGGTAAGAAGCGGTAGTCCCTCCAAGAACACGCTCAGGCTTGTCATGGATGTAAAACAACCAGTCAA GGTGCGCTCATCTTCATGGAAACCGAAAGGGGAATTGAATGGGATCAGAATTGATCTTGTTAATGATACTCCTTTAGTCA TAAATAATCGCAGGCAGTTGAGTTCGCCTGTTAAAACGATTAAAGCTTCAGTCCAGCAAACTCAATCAAAAATATCCAGC CAGCCATCAGAACAACGAATAACTGTGCATAAAACACCTGTTCAGGTTCCTCATAACCCATCAAAAAAACCTTTGCGTGA TGTTGTTGTAGTGTTGGATGCAGGGCATGGGGGCAAAGATCCTGGCGCAAGAGGTCCGCGTCGTAGTAACGAGAAGGATG TTGTGCTGGCCATTACTTTAAAACTTAAACGATTGATAGACAGGCAACCAGGTATGCGCGCAGTCCTGACACGATCGGGA GATTATTATGTTGGACTTAGACAACGCCTGGATATTGCCAGAAAATATAATGGTGATGTATTCATTTCTATCCATGCCGA TGCATTCAATAATCCTCACTCTAATGGAGCCTCGGTATTTGCCTTGTCACAAAGGGGAGCCACCAGTGAAGCAGCACGCT GGTTAGCAGAAAAGGAGAATTACTCTGAACTAGGTGGAGTGAATTTAGGTGAGTTGGATGATAGTAATGGGGTAGTACGC TCTGTTTTGATAGATTTATCACAAACTGCGACAATAAATGCTGGTTTGGAAATGGGGGGAAAAGTATTAGGCCAATTGGA TAATTTTACCAATTTGCATAATAACAAAGTGGAGCAAGCTCGTTTTGTTGTTCTGAAATCTCCAGATATTCCTTCTATTT TGGTTGAAACCGGGTTTATCTCAAATCCCCGTGAGGAAAGAAATTTAACCAACCCTGCCTATCAGGAGCGATTGAGTCAA GCAATATTTCAAGGACTAAAAAATTATTTTTGGGATCATCCTCCTCATGGGACTCGAATTGAGGCTATGATTTCTCCAAA TTTTCATATCGTTAAAAAGGGTGAAACTCTTCCTGCTATCGCTGCTCGATATAGGGTATCTGTGAACGCATTACAATCAA TTAACCGCCTTCAGGCAAGGGCAAGGCTTATGCCCGGGCAAAAATTAGTGATACCTGGCACATGGTCTTAA
Upstream 100 bases:
>100_bases TTCAGTTTAATTTAATAATTAAAGGGACTGGGCGCTTAATACAAATAGCTGCATTAAGTGTCGCGGGTAAAAGAATTTTA GCTTGCCTGGCGGGTGAATG
Downstream 100 bases:
>100_bases GGATACATCAACTTTCGCCAGCAATAGCCAATCAGATTGCAGCAGGAGAAGTTATAGAAAGGCCTGCTTCAGTAGTCAAG GAGCTGCTGGAAAACTCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 476; Mature: 476
Protein sequence:
>476_residues MMMRAWVLSLLLYLPSSFAVFSAQLKNITVSQQPTMTSLYLSIQGSFTHKLFTLSQPNRVVLDLSDTQLAVNISQLGLIN SLIQQVRSGSPSKNTLRLVMDVKQPVKVRSSSWKPKGELNGIRIDLVNDTPLVINNRRQLSSPVKTIKASVQQTQSKISS QPSEQRITVHKTPVQVPHNPSKKPLRDVVVVLDAGHGGKDPGARGPRRSNEKDVVLAITLKLKRLIDRQPGMRAVLTRSG DYYVGLRQRLDIARKYNGDVFISIHADAFNNPHSNGASVFALSQRGATSEAARWLAEKENYSELGGVNLGELDDSNGVVR SVLIDLSQTATINAGLEMGGKVLGQLDNFTNLHNNKVEQARFVVLKSPDIPSILVETGFISNPREERNLTNPAYQERLSQ AIFQGLKNYFWDHPPHGTRIEAMISPNFHIVKKGETLPAIAARYRVSVNALQSINRLQARARLMPGQKLVIPGTWS
Sequences:
>Translated_476_residues MMMRAWVLSLLLYLPSSFAVFSAQLKNITVSQQPTMTSLYLSIQGSFTHKLFTLSQPNRVVLDLSDTQLAVNISQLGLIN SLIQQVRSGSPSKNTLRLVMDVKQPVKVRSSSWKPKGELNGIRIDLVNDTPLVINNRRQLSSPVKTIKASVQQTQSKISS QPSEQRITVHKTPVQVPHNPSKKPLRDVVVVLDAGHGGKDPGARGPRRSNEKDVVLAITLKLKRLIDRQPGMRAVLTRSG DYYVGLRQRLDIARKYNGDVFISIHADAFNNPHSNGASVFALSQRGATSEAARWLAEKENYSELGGVNLGELDDSNGVVR SVLIDLSQTATINAGLEMGGKVLGQLDNFTNLHNNKVEQARFVVLKSPDIPSILVETGFISNPREERNLTNPAYQERLSQ AIFQGLKNYFWDHPPHGTRIEAMISPNFHIVKKGETLPAIAARYRVSVNALQSINRLQARARLMPGQKLVIPGTWS >Mature_476_residues MMMRAWVLSLLLYLPSSFAVFSAQLKNITVSQQPTMTSLYLSIQGSFTHKLFTLSQPNRVVLDLSDTQLAVNISQLGLIN SLIQQVRSGSPSKNTLRLVMDVKQPVKVRSSSWKPKGELNGIRIDLVNDTPLVINNRRQLSSPVKTIKASVQQTQSKISS QPSEQRITVHKTPVQVPHNPSKKPLRDVVVVLDAGHGGKDPGARGPRRSNEKDVVLAITLKLKRLIDRQPGMRAVLTRSG DYYVGLRQRLDIARKYNGDVFISIHADAFNNPHSNGASVFALSQRGATSEAARWLAEKENYSELGGVNLGELDDSNGVVR SVLIDLSQTATINAGLEMGGKVLGQLDNFTNLHNNKVEQARFVVLKSPDIPSILVETGFISNPREERNLTNPAYQERLSQ AIFQGLKNYFWDHPPHGTRIEAMISPNFHIVKKGETLPAIAARYRVSVNALQSINRLQARARLMPGQKLVIPGTWS
Specific function: Cell-wall hydrolase involved in septum cleavage during cell division [H]
COG id: COG0860
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI87082163, Length=370, Percent_Identity=37.8378378378378, Blast_Score=228, Evalue=9e-61, Organism=Escherichia coli, GI1790611, Length=433, Percent_Identity=35.1039260969977, Blast_Score=223, Evalue=2e-59, Organism=Escherichia coli, GI1788776, Length=225, Percent_Identity=48.4444444444444, Blast_Score=204, Evalue=8e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021731 - InterPro: IPR002508 - InterPro: IPR006311 [H]
Pfam domain/function: PF01520 Amidase_3; PF11741 AMIN [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 52704; Mature: 52704
Theoretical pI: Translated: 10.84; Mature: 10.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMMRAWVLSLLLYLPSSFAVFSAQLKNITVSQQPTMTSLYLSIQGSFTHKLFTLSQPNRV CCHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCCCEEEEEEEEECCEEEEEEEECCCCEE VLDLSDTQLAVNISQLGLINSLIQQVRSGSPSKNTLRLVMDVKQPVKVRSSSWKPKGELN EEEECCCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHCCCCCCCCCCCC GIRIDLVNDTPLVINNRRQLSSPVKTIKASVQQTQSKISSQPSEQRITVHKTPVQVPHNP CEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEECCCCC SKKPLRDVVVVLDAGHGGKDPGARGPRRSNEKDVVLAITLKLKRLIDRQPGMRAVLTRSG CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEECCC DYYVGLRQRLDIARKYNGDVFISIHADAFNNPHSNGASVFALSQRGATSEAARWLAEKEN CEEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC YSELGGVNLGELDDSNGVVRSVLIDLSQTATINAGLEMGGKVLGQLDNFTNLHNNKVEQA HHHHCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCE RFVVLKSPDIPSILVETGFISNPREERNLTNPAYQERLSQAIFQGLKNYFWDHPPHGTRI EEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEE EAMISPNFHIVKKGETLPAIAARYRVSVNALQSINRLQARARLMPGQKLVIPGTWS EEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC >Mature Secondary Structure MMMRAWVLSLLLYLPSSFAVFSAQLKNITVSQQPTMTSLYLSIQGSFTHKLFTLSQPNRV CCHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCCCEEEEEEEEECCEEEEEEEECCCCEE VLDLSDTQLAVNISQLGLINSLIQQVRSGSPSKNTLRLVMDVKQPVKVRSSSWKPKGELN EEEECCCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHCCCCCCCCCCCC GIRIDLVNDTPLVINNRRQLSSPVKTIKASVQQTQSKISSQPSEQRITVHKTPVQVPHNP CEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEECCCCC SKKPLRDVVVVLDAGHGGKDPGARGPRRSNEKDVVLAITLKLKRLIDRQPGMRAVLTRSG CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCEEEEECCC DYYVGLRQRLDIARKYNGDVFISIHADAFNNPHSNGASVFALSQRGATSEAARWLAEKEN CEEEEHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC YSELGGVNLGELDDSNGVVRSVLIDLSQTATINAGLEMGGKVLGQLDNFTNLHNNKVEQA HHHHCCCCCCCCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCE RFVVLKSPDIPSILVETGFISNPREERNLTNPAYQERLSQAIFQGLKNYFWDHPPHGTRI EEEEEECCCCCEEEEECCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEE EAMISPNFHIVKKGETLPAIAARYRVSVNALQSINRLQARARLMPGQKLVIPGTWS EEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]