Click here to switch to the map view.

The map label for this gene is 54295352

Identifier: 54295352

GI number: 54295352

Start: 2779938

End: 2780252

Strand: Reverse

Name: 54295352

Synonym: lpl2437

Alternate gene names: NA

Gene position: 2780252-2779938 (Counterclockwise)

Preceding gene: 54295353

Following gene: 54295351

Centisome position: 83.1

GC content: 39.68

Gene sequence:

>315_bases
ATGTATATGCTGTATTTTCATGTTCCAGAAACTCATCTTGACGTAGTAAAAAATGCGGTTTTTGCGGCAGGCGCAGGGCA
TGTTGATAATTATATTCATTGTGCCTGGCAAACTTTAGGAGAAGGTCAGTTTATGCCTTTACCAGGTAGTCAGGCATTTA
TTGGAGAAATTAATCAATTGGAAAAAGTGCCCGAATACAAGGTAGAAACGATTTGCGCCGGAGAGAAAATCAAAGAGGTG
GTTGCAGCTTTAAAAAAAGCTCATCCCTATGAAAGCCCTTCTTATCAAGTGGTACGTATTGAGACAGAGTTCTAA

Upstream 100 bases:

>100_bases
AAATTTTACCCCGGATGCTTCCTTTGCCTCTCCTGAATTACGATAATTACTGGCATTTCTATCTTGTGTGGTAATAAATA
TCAAAGGAGGCATAGCCATC

Downstream 100 bases:

>100_bases
ATATTAGAGCGAGAAATTCAGGCAGGTCGAATCACCAGAGGGTTGGTCAATTAGTAAGAATTTGTTTCTTCAGGATACTT
GTTCAATTGAGTATTCATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MYMLYFHVPETHLDVVKNAVFAAGAGHVDNYIHCAWQTLGEGQFMPLPGSQAFIGEINQLEKVPEYKVETICAGEKIKEV
VAALKKAHPYESPSYQVVRIETEF

Sequences:

>Translated_104_residues
MYMLYFHVPETHLDVVKNAVFAAGAGHVDNYIHCAWQTLGEGQFMPLPGSQAFIGEINQLEKVPEYKVETICAGEKIKEV
VAALKKAHPYESPSYQVVRIETEF
>Mature_104_residues
MYMLYFHVPETHLDVVKNAVFAAGAGHVDNYIHCAWQTLGEGQFMPLPGSQAFIGEINQLEKVPEYKVETICAGEKIKEV
VAALKKAHPYESPSYQVVRIETEF

Specific function: Unknown

COG id: COG3323

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0135 (NIF3) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002678
- InterPro:   IPR017221 [H]

Pfam domain/function: PF01784 NIF3 [H]

EC number: NA

Molecular weight: Translated: 11699; Mature: 11699

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMLYFHVPETHLDVVKNAVFAAGAGHVDNYIHCAWQTLGEGQFMPLPGSQAFIGEINQL
CEEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHH
EKVPEYKVETICAGEKIKEVVAALKKAHPYESPSYQVVRIETEF
HCCCCCCHHHEECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MYMLYFHVPETHLDVVKNAVFAAGAGHVDNYIHCAWQTLGEGQFMPLPGSQAFIGEINQL
CEEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHH
EKVPEYKVETICAGEKIKEVVAALKKAHPYESPSYQVVRIETEF
HCCCCCCHHHEECCHHHHHHHHHHHHCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]