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The map label for this gene is 54295327

Identifier: 54295327

GI number: 54295327

Start: 2744422

End: 2744985

Strand: Reverse

Name: 54295327

Synonym: lpl2412

Alternate gene names: NA

Gene position: 2744985-2744422 (Counterclockwise)

Preceding gene: 54295331

Following gene: 54295323

Centisome position: 82.05

GC content: 37.94

Gene sequence:

>564_bases
ATGAACGCTATACGTGCTTTTTTTGCTATTTCACTACCGCCATCGGTACAGGACAATATCTCAAATAATCTGGAGCCATT
GAGGCAGATGGCACCAGTTCACTCCATAAGATGGACGAAGCCAATCCATTTGCATATCACCTTGCAATTTTTACAGAGAT
TGGAAACAGAACATATTCAGGTCTTGATTGAAAGAGTAAGTAATGAACTTAATCATATAAAGCAATTTGATTTGGAATTG
GGTGTTTTAGAGTGGTTCCCTTCTCCCAAAAATCCAAGACTTATTTCATTATCTGTAGGTCCACAAGACAGACTAAGGGA
TTTGTCGCGAATGATCGGTCAGGCGATAGGTGGTTTAAGTTATCCTGTAGAAAAACGTCCGTTCAGAGGGCATTTGACAG
TAGGTAGAGTAGTGAATTTCAGCCCAAAACTTCAGCAGTTGTTGCAAATAAAATTTCCTATCATTTCACCAGTTCCGATT
AATAAATTTTATTTAATTGAAAGTAGGCCCGATAAAGAAGGAAGTAATTATTTTCCCTTGGCACAATTTGATTTAACCCG
GTAA

Upstream 100 bases:

>100_bases
GAAAAACAACAACGATCTTGATGATTAATTTGGAAAAGACGCTTCTTTTTCGGAATTTACTTTGTGAATTGCAATATTTT
TCCAATAGACGACGAATATT

Downstream 100 bases:

>100_bases
AAGAGAATGGCTGATTTGCCAATTGGAACGATTCTTTGCCTCTGTGTACAACTTATTATGCTCAAGTGTCTTTATTATTT
GGCATAGGATGAATTTAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: 2 5' RNA Ligase; 2 -5 RNA Ligase; 2 5' RNA Ligase Family Protein; 2-5' RNA Ligase Family Protein

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNAIRAFFAISLPPSVQDNISNNLEPLRQMAPVHSIRWTKPIHLHITLQFLQRLETEHIQVLIERVSNELNHIKQFDLEL
GVLEWFPSPKNPRLISLSVGPQDRLRDLSRMIGQAIGGLSYPVEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIISPVPI
NKFYLIESRPDKEGSNYFPLAQFDLTR

Sequences:

>Translated_187_residues
MNAIRAFFAISLPPSVQDNISNNLEPLRQMAPVHSIRWTKPIHLHITLQFLQRLETEHIQVLIERVSNELNHIKQFDLEL
GVLEWFPSPKNPRLISLSVGPQDRLRDLSRMIGQAIGGLSYPVEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIISPVPI
NKFYLIESRPDKEGSNYFPLAQFDLTR
>Mature_187_residues
MNAIRAFFAISLPPSVQDNISNNLEPLRQMAPVHSIRWTKPIHLHITLQFLQRLETEHIQVLIERVSNELNHIKQFDLEL
GVLEWFPSPKNPRLISLSVGPQDRLRDLSRMIGQAIGGLSYPVEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIISPVPI
NKFYLIESRPDKEGSNYFPLAQFDLTR

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21576; Mature: 21576

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIRAFFAISLPPSVQDNISNNLEPLRQMAPVHSIRWTKPIHLHITLQFLQRLETEHIQ
CCCCEEEEEEECCCCHHHHHHCCHHHHHHHCCHHHCCCCCCEEEEEHHHHHHHHHHHHHH
VLIERVSNELNHIKQFDLELGVLEWFPSPKNPRLISLSVGPQDRLRDLSRMIGQAIGGLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
YPVEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIISPVPINKFYLIESRPDKEGSNYFPL
CCCCCCCCCCCEEECCEECCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCE
AQFDLTR
ECCCCCC
>Mature Secondary Structure
MNAIRAFFAISLPPSVQDNISNNLEPLRQMAPVHSIRWTKPIHLHITLQFLQRLETEHIQ
CCCCEEEEEEECCCCHHHHHHCCHHHHHHHCCHHHCCCCCCEEEEEHHHHHHHHHHHHHH
VLIERVSNELNHIKQFDLELGVLEWFPSPKNPRLISLSVGPQDRLRDLSRMIGQAIGGLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
YPVEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIISPVPINKFYLIESRPDKEGSNYFPL
CCCCCCCCCCCEEECCEECCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCE
AQFDLTR
ECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA