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The map label for this gene is 54294900

Identifier: 54294900

GI number: 54294900

Start: 2219998

End: 2220831

Strand: Reverse

Name: 54294900

Synonym: lpl1979

Alternate gene names: NA

Gene position: 2220831-2219998 (Counterclockwise)

Preceding gene: 54294901

Following gene: 54294899

Centisome position: 66.38

GC content: 37.41

Gene sequence:

>834_bases
ATGTTGAGTACAAATCAAAATTTTGTTCCTGTTTTAAATACTGAAGCAGGACTATGTCTTACTGCGGCCAATTGGCAAGA
AATTAAGATTACAATTGCATCTTGTTATCTGGATTTATTGTTATTAAAGCCAGGATATTCATTATTGAAAAATATTACTG
ATTTCACCAAATATCTAGGGTGGTCAGGTCATCTCATCCTCAATGCAAGCCGCCTTGTATCTGATAAAAACGGGATGGTG
GTATTGATCTCACCTTATGACGGAAGTCGAATCAAATTAACTAACGCAGAGTTAGTACATTTGATTTTGCATATTAAGCC
TGTCGCAGTGCTTTTACCTGAAACGCTTGTGAATGGTTTTTCCGGGCTATGGGAGCAATGGGATGATACTATATTACCTT
TTTTGTCAATGAAGCAACTTGAAACCTTGCAGGTGCCTGGAAAACATGGTGTGTATTTCAATTTCAGTGAAGTAAAATAT
AATGATGATTTCTTGAGTCAATTGCAAAAATGGTCTGAATTTCCTCTTTATGTCTCTGGTCCTATCGGCGCAGATTTAAT
CGAGGATTTAAACAGGAAGAAATCGATTTTAATCGAATCGGATGAGCCTGCAAAAAATGCTATGCGGGGCATTGTATACG
GCCGCGAAGGGAATGTTGATTTAACGGATGAAAGCCAGGCTTTCAATTTTCAACTGATTGATGAGAATTGCTCATGTCCT
ACTTGTTCAGCACAGTTAACAAGAGCTTATCTGCATCATTTGTTAGCTAATACCCCATTGCTATGCCAGAGATTCTTGAT
TCAACATAATGCGTATTACGTTCAAGGTAATTAA

Upstream 100 bases:

>100_bases
ATCGATAAAAGGTATCGTTTTTTTAGTTATGGAGATGCCAGTTTATTGTTATAAAGTGCTCTGGAATATAATAATTTTGG
CTACAGTTAGAGGATAGTGG

Downstream 100 bases:

>100_bases
CTATTCATTTACCTTCGAGTAAATTCGCTATATGATGTCACGCTGGTAATCCATACAAGAGTTCTTAGAACTATCTTTTG
AAATTGGTTTATCGACCACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MLSTNQNFVPVLNTEAGLCLTAANWQEIKITIASCYLDLLLLKPGYSLLKNITDFTKYLGWSGHLILNASRLVSDKNGMV
VLISPYDGSRIKLTNAELVHLILHIKPVAVLLPETLVNGFSGLWEQWDDTILPFLSMKQLETLQVPGKHGVYFNFSEVKY
NDDFLSQLQKWSEFPLYVSGPIGADLIEDLNRKKSILIESDEPAKNAMRGIVYGREGNVDLTDESQAFNFQLIDENCSCP
TCSAQLTRAYLHHLLANTPLLCQRFLIQHNAYYVQGN

Sequences:

>Translated_277_residues
MLSTNQNFVPVLNTEAGLCLTAANWQEIKITIASCYLDLLLLKPGYSLLKNITDFTKYLGWSGHLILNASRLVSDKNGMV
VLISPYDGSRIKLTNAELVHLILHIKPVAVLLPETLVNGFSGLWEQWDDTILPFLSMKQLETLQVPGKHGVYFNFSEVKY
NDDFLSQLQKWSEFPLYVSGPIGADLIEDLNRKKSILIESDEPAKNAMRGIVYGREGNVDLTDESQAFNFQLIDENCSCP
TCSAQLTRAYLHHLLANTPLLCQRFLIQHNAYYVQGN
>Mature_277_residues
MLSTNQNFVPVLNTEAGLCLTAANWQEIKITIASCYLDLLLLKPGYSLLKNITDFTKYLGWSGHLILNASRLVSDKNGMV
VLISPYDGSRIKLTNAELVHLILHIKPVAVLLPETLVNGFSGLWEQWDDTILPFLSMKQLETLQVPGKHGVYFNFSEVKY
NDDFLSQLQKWSEFPLYVSGPIGADLIEDLNRKKSILIESDEPAKNAMRGIVYGREGNVDLTDESQAFNFQLIDENCSCP
TCSAQLTRAYLHHLLANTPLLCQRFLIQHNAYYVQGN

Specific function: Unknown

COG id: COG0343

COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31197; Mature: 31197

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSTNQNFVPVLNTEAGLCLTAANWQEIKITIASCYLDLLLLKPGYSLLKNITDFTKYLG
CCCCCCCEEEEEECCCCEEEEECCCEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
WSGHLILNASRLVSDKNGMVVLISPYDGSRIKLTNAELVHLILHIKPVAVLLPETLVNGF
CCCEEEEEHHHHCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLWEQWDDTILPFLSMKQLETLQVPGKHGVYFNFSEVKYNDDFLSQLQKWSEFPLYVSG
HHHHHHHCCHHHHHHHHHHHHHEECCCCCCEEEEEHHEEECHHHHHHHHHHCCCCEEEEC
PIGADLIEDLNRKKSILIESDEPAKNAMRGIVYGREGNVDLTDESQAFNFQLIDENCSCP
CCCHHHHHHCCCCCEEEEECCCCHHHHHHHEEECCCCCEEECCCCCEEEEEEECCCCCCC
TCSAQLTRAYLHHLLANTPLLCQRFLIQHNAYYVQGN
CHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MLSTNQNFVPVLNTEAGLCLTAANWQEIKITIASCYLDLLLLKPGYSLLKNITDFTKYLG
CCCCCCCEEEEEECCCCEEEEECCCEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
WSGHLILNASRLVSDKNGMVVLISPYDGSRIKLTNAELVHLILHIKPVAVLLPETLVNGF
CCCEEEEEHHHHCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
SGLWEQWDDTILPFLSMKQLETLQVPGKHGVYFNFSEVKYNDDFLSQLQKWSEFPLYVSG
HHHHHHHCCHHHHHHHHHHHHHEECCCCCCEEEEEHHEEECHHHHHHHHHHCCCCEEEEC
PIGADLIEDLNRKKSILIESDEPAKNAMRGIVYGREGNVDLTDESQAFNFQLIDENCSCP
CCCHHHHHHCCCCCEEEEECCCCHHHHHHHEEECCCCCEEECCCCCEEEEEEECCCCCCC
TCSAQLTRAYLHHLLANTPLLCQRFLIQHNAYYVQGN
CHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA