| Definition | Legionella pneumophila str. Lens, complete genome. |
|---|---|
| Accession | NC_006369 |
| Length | 3,345,687 |
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The map label for this gene is glyS [H]
Identifier: 54294727
GI number: 54294727
Start: 2017754
End: 2019820
Strand: Reverse
Name: glyS [H]
Synonym: lpl1804
Alternate gene names: 54294727
Gene position: 2019820-2017754 (Counterclockwise)
Preceding gene: 54294728
Following gene: 54294726
Centisome position: 60.37
GC content: 40.49
Gene sequence:
>2067_bases ATGGTCAATGATTTTATTTTTGAATTAGGATGTGAAGAGCTGCCTTCTGGCGCTGTTTGGCCTTTGGCAAATGAGTTTTC TACTCGATTGTTAGCCGCATTAGATAAGGCGCAATTAAGTTATGGTGAAGTCAAGAGATTCGCTACACCAAGACGCCTGG CTATTGTGATTCATGACTTACAAACTGAACAGGAAAGCCAAAAAGTCATGCGACGCGGTCCTGCTGCAATAGCAGCATAC GATAGTGAAGGTAACCCGACTCCTGCTTTGTTAGGATTTGCAAAATCATGTGGTGTTACGGTAGATGCTCTCACCAAGAT TCAAACTGACAAAGGTGAATGGATTGTTTTTGAAACTCAGAGTGAGGGTACTAAAACAAAAGATCTCTTGCCTGGATTGG TTAGTCTGTCTTTAGAGTCTTTACCTATCACAAAACCCATGAGATGGGGAGAAGGAGATGACGAATTTGCCCGACCTGTC CATTGGGCCGTGATGCTTTATGGAAGTGAGACACTCAATCATAAAATTTTAGGCGTTACAAGTGGATGTCATAGCAGGGG ACATCGTTTTCATCATCCTCAGGAAATAAGAATAAATTCAGCTGCAAGCTATGAAGATCAGATGAAAGATGCTTTTGTAA TTGCCGATTTTGCTACCAGGCGACAAGCCATTATCCATCAGGTACAAGAATTAGCAGCACCTCTAGGTGCTTCAGTGGTT ATGCCTGAAGAATTGGTTGATGAAGTTACCTCAATAGTCGAATGGCCTCAAGCGCTCATTGCAAATTTTGAACAGGAGTT TTTAGAGGTTCCTGCTGAAGCTCTTATTGCTTCCATGCAATCTCATCAGAAGTGTTTTGCACTAAAAAATAAGCATGGTG AGCTGCTACATTATTTTATTACGGTATCAAATATCGCCAGTTCCAATCCAAAACAAGTAGTTTTAGGAAACGAGAAGGTA ATGAGGGCAAGATTAAGTGATGCTGCCTTTTTCTTTAAACAAGATAAAAAACAGCCGCTAAGCGCGCATATACCTTCTAC CGAGCAGGTTATTTTTCAAGTAAAGCTGGGAAGCATGTATGATAAGGTACAACGAATAAAGGCAATGATGGATCATTTAA GCCAATCTCTCAATTTACCTTCTCACCTGGCTGAGCGAGCTACATTATTAAGCAAGTGTGATTTGATGACAGGTATGGTA GGCGAATTTCCTGAATTGCAAGGGATCATGGGGTATTATTATGCTCTTAATGATGGCGAAGAAGCTATTGTTGCTACCGC TTTAAATGAGCAATACATGCCTAGATTTTCTGGTGATGATTTACCATCGACTGATTTGGGTAAGGCACTTTCCCTGGCGG ATCGTATCGATACTCTGGCGGGTATTTTTGCTATTGGCCAAAAGCCAACTGGAGTAAAAGATCCTTTTAAATTAAGACGC CACGCTTTGGCTGTAGTCCGTTTACTCATTTCAATATCGGCACCGCTTAATTTATCAACTTTGATTAAAGAAGCCTTGGC TAATTATGGTGATCGACTCCCTCAAGACAAGAATTTAGTGGCTGAATTAAAACCATTTATTCTTGAGAGACTTCAATCCT ATTATCAAAATCAAGGTATCAGCGCTGATTTGGTTCATGCTGTTCGTGCTCGTCAGGATGATTGGTTATATGATTTAGAT AAGCGTCTATTCGCTTTAAAGTCATTTATTACTATGCCAGAGGCGACATCATTATCAGCTGCCTGTAAGCGTGTTGGCAA TATCTTGGCTCAGGCAGCATATGCGAATAAAAAAGTAGATATTAAGGAAGAGCTTATAGAGGAAGGCGCTGAAAAAGCAT TATTTGATCATCTTAATAAAATTACTAAAACAGTAGAAACTTTATACATTGCCGGAGATTACCAAGCATTACTTAAGCTT CTGGCTAGTCTTAAAGAGCCAGTAGACGCTTTTTTTGATCATGTGATGGTTATGGTTGAGGAGGAGTCATTGAAACAGAA CAGGCTTGCGCTCCTGCAGCGATTACAAGAGTTATTGCAGGGTGTAGCTGACATTTCAATGTTGTAG
Upstream 100 bases:
>100_bases CAAAGGTATATATTACGTGTAAGACATCTATCAAGAGCAGTAGCTCAAGCTTACTATCAAGCGCGCGAGGCGTTAGGTTT CCCTATGCAAAAGGTGTGTA
Downstream 100 bases:
>100_bases CACTTATGAATCGAATTATATTGCTTGATAGAGATGGAGTAATTAACACTGACTCAATCAATTATATTAAGAATGCTGAT GAGCTTATTATTATACCCGA
Product: glycyl-tRNA synthetase beta chain
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 688; Mature: 688
Protein sequence:
>688_residues MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDLQTEQESQKVMRRGPAAIAAY DSEGNPTPALLGFAKSCGVTVDALTKIQTDKGEWIVFETQSEGTKTKDLLPGLVSLSLESLPITKPMRWGEGDDEFARPV HWAVMLYGSETLNHKILGVTSGCHSRGHRFHHPQEIRINSAASYEDQMKDAFVIADFATRRQAIIHQVQELAAPLGASVV MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNKHGELLHYFITVSNIASSNPKQVVLGNEKV MRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMYDKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMV GEFPELQGIMGYYYALNDGEEAIVATALNEQYMPRFSGDDLPSTDLGKALSLADRIDTLAGIFAIGQKPTGVKDPFKLRR HALAVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGISADLVHAVRARQDDWLYDLD KRLFALKSFITMPEATSLSAACKRVGNILAQAAYANKKVDIKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKL LASLKEPVDAFFDHVMVMVEEESLKQNRLALLQRLQELLQGVADISML
Sequences:
>Translated_688_residues MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDLQTEQESQKVMRRGPAAIAAY DSEGNPTPALLGFAKSCGVTVDALTKIQTDKGEWIVFETQSEGTKTKDLLPGLVSLSLESLPITKPMRWGEGDDEFARPV HWAVMLYGSETLNHKILGVTSGCHSRGHRFHHPQEIRINSAASYEDQMKDAFVIADFATRRQAIIHQVQELAAPLGASVV MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNKHGELLHYFITVSNIASSNPKQVVLGNEKV MRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMYDKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMV GEFPELQGIMGYYYALNDGEEAIVATALNEQYMPRFSGDDLPSTDLGKALSLADRIDTLAGIFAIGQKPTGVKDPFKLRR HALAVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGISADLVHAVRARQDDWLYDLD KRLFALKSFITMPEATSLSAACKRVGNILAQAAYANKKVDIKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKL LASLKEPVDAFFDHVMVMVEEESLKQNRLALLQRLQELLQGVADISML >Mature_688_residues MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDLQTEQESQKVMRRGPAAIAAY DSEGNPTPALLGFAKSCGVTVDALTKIQTDKGEWIVFETQSEGTKTKDLLPGLVSLSLESLPITKPMRWGEGDDEFARPV HWAVMLYGSETLNHKILGVTSGCHSRGHRFHHPQEIRINSAASYEDQMKDAFVIADFATRRQAIIHQVQELAAPLGASVV MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNKHGELLHYFITVSNIASSNPKQVVLGNEKV MRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMYDKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMV GEFPELQGIMGYYYALNDGEEAIVATALNEQYMPRFSGDDLPSTDLGKALSLADRIDTLAGIFAIGQKPTGVKDPFKLRR HALAVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGISADLVHAVRARQDDWLYDLD KRLFALKSFITMPEATSLSAACKRVGNILAQAAYANKKVDIKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKL LASLKEPVDAFFDHVMVMVEEESLKQNRLALLQRLQELLQGVADISML
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=687, Percent_Identity=44.5414847161572, Blast_Score=577, Evalue=1e-166,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 76564; Mature: 76564
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDL CCCHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHH QTEQESQKVMRRGPAAIAAYDSEGNPTPALLGFAKSCGVTVDALTKIQTDKGEWIVFETQ HCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEEC SEGTKTKDLLPGLVSLSLESLPITKPMRWGEGDDEFARPVHWAVMLYGSETLNHKILGVT CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHEEEEEEECCHHHCCEEEEEE SGCHSRGHRFHHPQEIRINSAASYEDQMKDAFVIADFATRRQAIIHQVQELAAPLGASVV CCHHHCCCCCCCCCCEEECCCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCCC MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNKHGELLHYFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHE TVSNIASSNPKQVVLGNEKVMRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMY EHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHH DKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMVGEFPELQGIMGYYYALNDGE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEECCCC EAIVATALNEQYMPRFSGDDLPSTDLGKALSLADRIDTLAGIFAIGQKPTGVKDPFKLRR CEEEEEHHCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH HALAVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC SADLVHAVRARQDDWLYDLDKRLFALKSFITMPEATSLSAACKRVGNILAQAAYANKKVD CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC IKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKLLASLKEPVDAFFDHVMVMVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC EESLKQNRLALLQRLQELLQGVADISML HHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVNDFIFELGCEELPSGAVWPLANEFSTRLLAALDKAQLSYGEVKRFATPRRLAIVIHDL CCCHHHHHHCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHH QTEQESQKVMRRGPAAIAAYDSEGNPTPALLGFAKSCGVTVDALTKIQTDKGEWIVFETQ HCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEEC SEGTKTKDLLPGLVSLSLESLPITKPMRWGEGDDEFARPVHWAVMLYGSETLNHKILGVT CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCHHEEEEEEECCHHHCCEEEEEE SGCHSRGHRFHHPQEIRINSAASYEDQMKDAFVIADFATRRQAIIHQVQELAAPLGASVV CCHHHCCCCCCCCCCEEECCCCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCCC MPEELVDEVTSIVEWPQALIANFEQEFLEVPAEALIASMQSHQKCFALKNKHGELLHYFI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHE TVSNIASSNPKQVVLGNEKVMRARLSDAAFFFKQDKKQPLSAHIPSTEQVIFQVKLGSMY EHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEEEHHHHHH DKVQRIKAMMDHLSQSLNLPSHLAERATLLSKCDLMTGMVGEFPELQGIMGYYYALNDGE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEECCCC EAIVATALNEQYMPRFSGDDLPSTDLGKALSLADRIDTLAGIFAIGQKPTGVKDPFKLRR CEEEEEHHCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH HALAVVRLLISISAPLNLSTLIKEALANYGDRLPQDKNLVAELKPFILERLQSYYQNQGI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC SADLVHAVRARQDDWLYDLDKRLFALKSFITMPEATSLSAACKRVGNILAQAAYANKKVD CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC IKEELIEEGAEKALFDHLNKITKTVETLYIAGDYQALLKLLASLKEPVDAFFDHVMVMVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC EESLKQNRLALLQRLQELLQGVADISML HHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA