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The map label for this gene is fliN [H]

Identifier: 54294678

GI number: 54294678

Start: 1958613

End: 1958942

Strand: Reverse

Name: fliN [H]

Synonym: lpl1755

Alternate gene names: 54294678

Gene position: 1958942-1958613 (Counterclockwise)

Preceding gene: 54294679

Following gene: 54294677

Centisome position: 58.55

GC content: 40.61

Gene sequence:

>330_bases
ATGACTCAAGTGAACGAAAACACTACGGAGCAATTAAATCAAGGGAATCCACTGAATCCAGACCCTGGAAATGAGAAACT
GGAATTAATTTTAGATATCCCTGTCTCAGTGACTGTTGAAATCGGCCGTACCAAAATGACTATTCGTAATTTACTGCAAT
TAAACCAGGGAGGAATCGTAGCGCTTGATAGGCTGGCCGGTGATCCTCTTGATGTGCTAGTTAATGGTACTTTAGTCGCA
CATGGTGAAGTTGTTGTAGTTAACGATAAGTTTGGTGTCAGATTAACTGATATCGTTAGCAAGGCTGAACGAATAAAACG
TCTCAAATGA

Upstream 100 bases:

>100_bases
GGATATAGAAGGGACACCAAGCTTTACTGCAACCTTAGGCAGTGCCAATGAAAAACGAGCTTTGAAAATCATTAAAATAA
TACGTTATTAGGGGATAAGG

Downstream 100 bases:

>100_bases
AAAATAAAGTACCTCATCTGGCATTTTTGAGTCTTTCTCTAATCAGTTCGGTCGGTTGGTCATCTTCTTCAAGCTCAAAC
GTGATCAGCCATGGCGAACT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 109; Mature: 108

Protein sequence:

>109_residues
MTQVNENTTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLDVLVNGTLVA
HGEVVVVNDKFGVRLTDIVSKAERIKRLK

Sequences:

>Translated_109_residues
MTQVNENTTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLDVLVNGTLVA
HGEVVVVNDKFGVRLTDIVSKAERIKRLK
>Mature_108_residues
TQVNENTTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIVALDRLAGDPLDVLVNGTLVAH
GEVVVVNDKFGVRLTDIVSKAERIKRLK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=85, Percent_Identity=62.3529411764706, Blast_Score=118, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 11906; Mature: 11775

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVNENTTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIV
CCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHCCCCCEE
ALDRLAGDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERIKRLK
EEECCCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQVNENTTEQLNQGNPLNPDPGNEKLELILDIPVSVTVEIGRTKMTIRNLLQLNQGGIV
CCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCHHHHHHHHHCCCCCEE
ALDRLAGDPLDVLVNGTLVAHGEVVVVNDKFGVRLTDIVSKAERIKRLK
EEECCCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]