Click here to switch to the map view.

The map label for this gene is 54294113

Identifier: 54294113

GI number: 54294113

Start: 1314008

End: 1315351

Strand: Reverse

Name: 54294113

Synonym: lpl1177

Alternate gene names: NA

Gene position: 1315351-1314008 (Counterclockwise)

Preceding gene: 54294120

Following gene: 54294112

Centisome position: 39.31

GC content: 38.24

Gene sequence:

>1344_bases
GTGAGCGTCCGTCAACCAGCCGTAGCTGGGTATTTTTATCCCGACGATCCATTGACTTTAAAGCAAACCGTACTGAATTT
CCTGGACCAAGCGCCAATTCACAAGCCTGCTCCAAAAGCAATACTGGTTCCGCATGCTGGTTATGTCTACTCAGGATCTG
TCGCAGCTTCTGCATATGCTTCATTGCGAGATAAGAAAAATTCCATCAATAAAATTATAATATTAGGCCCTGCTCACAGA
TTATATTTCAAAGGCATAGCCTATGATCCTGTCGATAAATTCGCTACACCATTGGGAGAAATTCAACAGGATAAAGAGTT
ACTAACTCAAATTATAGATCTGCCTTATGTTTATTCACTTCCTGAAGCTCATCAAAATGAACATTGTCTGGAAGTACAAT
TACCTTTCTGCCAAATGATATTCTCCAAATTTAAAATACTTCCTCTGGTTGTTGGAGAAACGAATCCCCAGGATGTAGCC
CGTCTAATAGCGCGAGTATGGGGTGGAGATAATACTCTCCTGATTATTAGCTCTGATTTAAGCCATTATCTGCCCTATCA
CATAGCCCAAAGAGAAGATAAAAAAACTTGCCTTTCCATAGACACTTTAAATGGTGAAGAAATACTGCATGATGCTGCTT
GCGGTTATTTTCCACTGCGCGGTTTCCTGTATTTCGCACGCCAACACCATATTTATAGCCGTCTGCTTGATTTACGCAAC
TCTGGCGATACAGCTGGAGATAAAGAAAGAGTAGTCGGGTATGCGGCCTATCACTTCTACCAAAAACTTAATTTTTCAGA
ACATTGCGCGGATGAATTGAAATACATCGCGAAAGAAACAATACGATTACAAACAGAGGAAAATAAAGCATTGGCAATTA
ATTACAATGATTATAGTCAATTATTGCAGATACGAGTCCCTACTTTTATTACTCTAAAAAAAAATGGCATGCTAAGAGGT
TGCATGGGAAGCCTGATAGCTAAAGAGCGATTAGCAGATAACGTCATTTACAATTCCATACGGGCAGCAAGTGCTGATCC
ACGCTTCCCACAAATAAGGCCATCTGAACTCAAGGAATTGTCTCTAACTATCTCATTAATAAAACCATTATCTCCGCTAT
ATTTTGACAATGAAGAAGAACTCAAATCACAATTGCAAATTGGCATAGATGGCTTGGTATTAATTTATGGCTCCTATCAA
GCTACTTTTTTACCTTCTGTATGGGAATCTGTTAAAACAAAAGATGAATTTGTTAATCATTTAAAATTAAAAATGGGGCT
TACAGAAAATTTCTGGTCTTCAGAAATGAAAGCACTTCGCTACTCAACAGAAATAATAAAATAA

Upstream 100 bases:

>100_bases
CAGTATTTGGTTGGAATAGTATCAAACATCAAATAGCCCACAATCAACTCTTAGTCTATATTTATAAGTATAGTATGTTC
AGTTGTTCCGGAGTGTTGTT

Downstream 100 bases:

>100_bases
ATTGGAAAATTCATTAATTATGCTCAAATAAGAATCCAGCCCCAAATATTATTTTCATATAGCCCAGATTTATAATATTT
CTGGTAAATACGAGGATGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MSVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGSVAASAYASLRDKKNSINKIIILGPAHR
LYFKGIAYDPVDKFATPLGEIQQDKELLTQIIDLPYVYSLPEAHQNEHCLEVQLPFCQMIFSKFKILPLVVGETNPQDVA
RLIARVWGGDNTLLIISSDLSHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFARQHHIYSRLLDLRN
SGDTAGDKERVVGYAAYHFYQKLNFSEHCADELKYIAKETIRLQTEENKALAINYNDYSQLLQIRVPTFITLKKNGMLRG
CMGSLIAKERLADNVIYNSIRAASADPRFPQIRPSELKELSLTISLIKPLSPLYFDNEEELKSQLQIGIDGLVLIYGSYQ
ATFLPSVWESVKTKDEFVNHLKLKMGLTENFWSSEMKALRYSTEIIK

Sequences:

>Translated_447_residues
MSVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGSVAASAYASLRDKKNSINKIIILGPAHR
LYFKGIAYDPVDKFATPLGEIQQDKELLTQIIDLPYVYSLPEAHQNEHCLEVQLPFCQMIFSKFKILPLVVGETNPQDVA
RLIARVWGGDNTLLIISSDLSHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFARQHHIYSRLLDLRN
SGDTAGDKERVVGYAAYHFYQKLNFSEHCADELKYIAKETIRLQTEENKALAINYNDYSQLLQIRVPTFITLKKNGMLRG
CMGSLIAKERLADNVIYNSIRAASADPRFPQIRPSELKELSLTISLIKPLSPLYFDNEEELKSQLQIGIDGLVLIYGSYQ
ATFLPSVWESVKTKDEFVNHLKLKMGLTENFWSSEMKALRYSTEIIK
>Mature_446_residues
SVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGSVAASAYASLRDKKNSINKIIILGPAHRL
YFKGIAYDPVDKFATPLGEIQQDKELLTQIIDLPYVYSLPEAHQNEHCLEVQLPFCQMIFSKFKILPLVVGETNPQDVAR
LIARVWGGDNTLLIISSDLSHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFARQHHIYSRLLDLRNS
GDTAGDKERVVGYAAYHFYQKLNFSEHCADELKYIAKETIRLQTEENKALAINYNDYSQLLQIRVPTFITLKKNGMLRGC
MGSLIAKERLADNVIYNSIRAASADPRFPQIRPSELKELSLTISLIKPLSPLYFDNEEELKSQLQIGIDGLVLIYGSYQA
TFLPSVWESVKTKDEFVNHLKLKMGLTENFWSSEMKALRYSTEIIK

Specific function: Unknown

COG id: COG1355

COG function: function code R; Predicted dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0103 family [H]

Homologues:

Organism=Homo sapiens, GI7705720, Length=189, Percent_Identity=28.042328042328, Blast_Score=89, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI32566861, Length=187, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI25146594, Length=187, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6322467, Length=205, Percent_Identity=32.6829268292683, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21357419, Length=191, Percent_Identity=29.3193717277487, Blast_Score=96, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020619
- InterPro:   IPR002737 [H]

Pfam domain/function: PF01875 Memo [H]

EC number: NA

Molecular weight: Translated: 50744; Mature: 50613

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS51112 AMMECR1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGSVAASAYA
CCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEECCHHHHHHH
SLRDKKNSINKIIILGPAHRLYFKGIAYDPVDKFATPLGEIQQDKELLTQIIDLPYVYSL
HHHHHCCCCCEEEEECCCCEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEECC
PEAHQNEHCLEVQLPFCQMIFSKFKILPLVVGETNPQDVARLIARVWGGDNTLLIISSDL
CCCCCCCCEEEEECHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCH
SHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFARQHHIYSRLLDLRN
HHHCCHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
SGDTAGDKERVVGYAAYHFYQKLNFSEHCADELKYIAKETIRLQTEENKALAINYNDYSQ
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCHHH
LLQIRVPTFITLKKNGMLRGCMGSLIAKERLADNVIYNSIRAASADPRFPQIRPSELKEL
HHHEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
SLTISLIKPLSPLYFDNEEELKSQLQIGIDGLVLIYGSYQATFLPSVWESVKTKDEFVNH
HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCHHCCHHHHHHHCCHHHHHHH
LKLKMGLTENFWSSEMKALRYSTEIIK
HHHEECCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVRQPAVAGYFYPDDPLTLKQTVLNFLDQAPIHKPAPKAILVPHAGYVYSGSVAASAYA
CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEECCHHHHHHH
SLRDKKNSINKIIILGPAHRLYFKGIAYDPVDKFATPLGEIQQDKELLTQIIDLPYVYSL
HHHHHCCCCCEEEEECCCCEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHCCCCEECC
PEAHQNEHCLEVQLPFCQMIFSKFKILPLVVGETNPQDVARLIARVWGGDNTLLIISSDL
CCCCCCCCEEEEECHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCH
SHYLPYHIAQREDKKTCLSIDTLNGEEILHDAACGYFPLRGFLYFARQHHIYSRLLDLRN
HHHCCHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
SGDTAGDKERVVGYAAYHFYQKLNFSEHCADELKYIAKETIRLQTEENKALAINYNDYSQ
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCHHH
LLQIRVPTFITLKKNGMLRGCMGSLIAKERLADNVIYNSIRAASADPRFPQIRPSELKEL
HHHEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
SLTISLIKPLSPLYFDNEEELKSQLQIGIDGLVLIYGSYQATFLPSVWESVKTKDEFVNH
HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCHHCCHHHHHHHCCHHHHHHH
LKLKMGLTENFWSSEMKALRYSTEIIK
HHHEECCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]