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The map label for this gene is yciR [C]

Identifier: 54294112

GI number: 54294112

Start: 1311550

End: 1313856

Strand: Reverse

Name: yciR [C]

Synonym: lpl1176

Alternate gene names: 54294112

Gene position: 1313856-1311550 (Counterclockwise)

Preceding gene: 54294113

Following gene: 54294110

Centisome position: 39.27

GC content: 34.72

Gene sequence:

>2307_bases
ATGCTAATTTTAAAATATAAGAATTTTGAGATACAAAAAATGGATAATTCATCTGTATTCAATGAAACCACTCTAAAACG
TGTACCCCATTTTTTGGTATTGATTATTATTTTACTGTTAGGTCTGCCTTATATAGGTCTAAACTGGGGTTTAGACTTTA
GTAATTTAGCCATTACAATAAATGATGGGAAAATAGCCGGCTCCCAACTCATTGAATCTCAAATTCGCGGTTACTTCCGA
CAAACTCTCTTACAATGGTCTGGATTTTCTCTTGCTGCAGTGACGGTATTATTAGCATTTACTCAATATCGATTAAGTAA
TGATAAAATTGCTTTAATTATTGGCCTTGCCATTCTATTCTCTGGCTCCATTGAAGCGCTGCATACCCTGGTTATTGATG
GCCTGGCTTTGCAAGGTCCCGAAAAAAATAACCTGGACGCTTTAATTTGGTTTTTTTCAAACAGTGTTAGCGGCTTAATT
CTAATCACCGGGCTTTCTTTACTGGTGCATGCAGGTGCTAATAAACCAGTGAGATTAGTGACTTTTATTCTACTGACTAC
TTTTTGGGTCTTGGCTGCTATCGCAGTCATTTATTATGCCGCTGTAATAATACAAATTCCTGATATGTGGCTTTATGATT
CTTATGTTTCCAGACCTTTTGAACTCATATCCGTCTTTATCTATCTTATGTTGATGATTATTGTTTACCCAAAAATCTAT
GCATCTTACCCGACTATTTTATCTGATTCTGTATTCTATATGTCACTCACCCAAGTCGTGTTGGCTATCTACATCATGTT
ATTATCAACAACTCCGTATGACAGCGCCTTTAATATAGCATATTTTCTTAAAGTGGTTGTTTATTTTATACCTTGCACCT
GTTTTGTAATTAACTACGTTTTTTCATACTCAGCGGTACTGGAAGGGCAAAAAAACTTAAAAATAAAACAGGAAGAGTTA
AAATATATGGCCTCTCATGATCCTCTGACAAATCTGTTTAATCGCAGGGAATTTGAAGATTTGCTTGATAAATCCATTGC
TAATGCCCAAAGAAATAACTCTTCCCTGGCTTTACTGCTTATTGATTTAGATAATTTCAAGGCAATAAATGACACATTTG
GTCATTTTCACGGCGATGAACTTTTAAAACAATTTGCCAATCGCCTGGTTTTACTAGTTCGAAAAGGTGATCTGTTATCC
AGAGTAGGCGGAGATGAATTTACATTAATCTCGCTGAATATAGAATCACCTTCCAGCGCACGTCATCTGGCAGAACGAAT
TTTAAATGAATTAAACAGTCCCTATACTATCAATGGCAAATTAATCACAGTAACGGTCAGTATAGGTATATCTATTTTTC
CTGATGATGGAAATACTACAGAAGATCTGTTAAGAAAAGCGGACTTGGCTATGTATAAAGCAAAAAACTCAGGGAAAAAT
ACCTATCAATTTTATACTGAACAACTAGGTTATTCACAGCATAGGGAATCCGAGCTGGAATCTCATCTTCGAAAAGCATT
ACAAAATGATGAATTTGAACTTTATTATCAACCCAAATTTAACCTGATTAATATGGAGATTATTGGCGCAGAAATTCTTT
TACGCTGGAATAATGAAGCCCTGGGAGGGGTGTCTCCTAATGAGTTTATACCTGTAGCAGAAAATACTGGATTAATAACA
GAACTGAGTCAATGGGTTTTACAAAAATCGTGCATACAAATAATGCACTGGGCTAGTCAATACAACAAGATGCTTTCCTT
TTCCATAAATATTTCGCCTGTTCAATTAACAAATCCACAGTTTCCTAAAATTCTTGAAAAAACACTACAGGAATATCAAT
ACCCTGCAGAATATCTCGAACTTGAAATTACTGAAAACACTTTAATGGGGGATCAAGATGAAATCTCCAAAATGCTTAAT
GTAATTTCTGACTTGGGAATAAAGTTGTCATTGGATGATTTTGGCAAGGAATACTCTTCTCTTAACAGATTAAAAACTCT
CCCTATTGACAGCTTAAAAATTGATAAAACATTTATCTCTGATATACACAGCGAACATGAGAAAGTAGTCATTATAGACA
TTATTATTAAATTGGCCAATGAGTTAGGAATGAGTATTGTTGCCGAGGGTATTGAAACCATACCTCAATTAAAATATCTT
GTGTCAAGAAAATGTCATTTTGGTCAAGGCTTCCTCCTGAGTAAGCCCTTAACTGCAAATGAGTTCACTTCAATTGCTTA
TACCAAGTTGGGAAAAACCAAATCTAACGCAAAAGTCATTTCATTAATTAACAATAACAGATTTTAA

Upstream 100 bases:

>100_bases
TTTTCATATAGCCCAGATTTATAATATTTCTGGTAAATACGAGGATGCCCAGATTAACAGGATATAAAATCAGCAATTTT
GCCAATAACAGGCACATTTT

Downstream 100 bases:

>100_bases
TTAGAATCATATACTGGATCTTTCAAGGTGAATTTCTTATAGATGCTATGCATTTTACGTGATATCGTTCATTTAAGGAT
ATAAAAGGCTTTTCTTTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 768; Mature: 768

Protein sequence:

>768_residues
MLILKYKNFEIQKMDNSSVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIAGSQLIESQIRGYFR
QTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVIDGLALQGPEKNNLDALIWFFSNSVSGLI
LITGLSLLVHAGANKPVRLVTFILLTTFWVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEEL
KYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLS
RVGGDEFTLISLNIESPSSARHLAERILNELNSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIPVAENTGLIT
ELSQWVLQKSCIQIMHWASQYNKMLSFSINISPVQLTNPQFPKILEKTLQEYQYPAEYLELEITENTLMGDQDEISKMLN
VISDLGIKLSLDDFGKEYSSLNRLKTLPIDSLKIDKTFISDIHSEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
VSRKCHFGQGFLLSKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRF

Sequences:

>Translated_768_residues
MLILKYKNFEIQKMDNSSVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIAGSQLIESQIRGYFR
QTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVIDGLALQGPEKNNLDALIWFFSNSVSGLI
LITGLSLLVHAGANKPVRLVTFILLTTFWVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEEL
KYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLS
RVGGDEFTLISLNIESPSSARHLAERILNELNSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIPVAENTGLIT
ELSQWVLQKSCIQIMHWASQYNKMLSFSINISPVQLTNPQFPKILEKTLQEYQYPAEYLELEITENTLMGDQDEISKMLN
VISDLGIKLSLDDFGKEYSSLNRLKTLPIDSLKIDKTFISDIHSEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
VSRKCHFGQGFLLSKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRF
>Mature_768_residues
MLILKYKNFEIQKMDNSSVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITINDGKIAGSQLIESQIRGYFR
QTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILFSGSIEALHTLVIDGLALQGPEKNNLDALIWFFSNSVSGLI
LITGLSLLVHAGANKPVRLVTFILLTTFWVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYVFSYSAVLEGQKNLKIKQEEL
KYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLLIDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLS
RVGGDEFTLISLNIESPSSARHLAERILNELNSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEALGGVSPNEFIPVAENTGLIT
ELSQWVLQKSCIQIMHWASQYNKMLSFSINISPVQLTNPQFPKILEKTLQEYQYPAEYLELEITENTLMGDQDEISKMLN
VISDLGIKLSLDDFGKEYSSLNRLKTLPIDSLKIDKTFISDIHSEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
VSRKCHFGQGFLLSKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=426, Percent_Identity=33.8028169014084, Blast_Score=265, Evalue=7e-72,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=31.002331002331, Blast_Score=231, Evalue=2e-61,
Organism=Escherichia coli, GI226510982, Length=437, Percent_Identity=29.0617848970252, Blast_Score=186, Evalue=4e-48,
Organism=Escherichia coli, GI87081980, Length=265, Percent_Identity=35.8490566037736, Blast_Score=149, Evalue=8e-37,
Organism=Escherichia coli, GI87081845, Length=256, Percent_Identity=33.59375, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=34.2741935483871, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1788381, Length=421, Percent_Identity=27.790973871734, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=31.9502074688797, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=32.9218106995885, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1786507, Length=246, Percent_Identity=31.3008130081301, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1787055, Length=410, Percent_Identity=25.609756097561, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1788849, Length=447, Percent_Identity=25.503355704698, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=34.7560975609756, Blast_Score=116, Evalue=6e-27,
Organism=Escherichia coli, GI87082096, Length=472, Percent_Identity=25, Blast_Score=109, Evalue=7e-25,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=37.9518072289157, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=36.5168539325843, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=40.1162790697674, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=36.4705882352941, Blast_Score=97, Evalue=6e-21,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=35.4651162790698, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=37.1794871794872, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1789650, Length=442, Percent_Identity=20.8144796380091, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=238, Percent_Identity=30.2521008403361, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=34.7560975609756, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.7619047619048, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081974, Length=105, Percent_Identity=36.1904761904762, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 86946; Mature: 86946

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILKYKNFEIQKMDNSSVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITI
CEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEE
NDGKIAGSQLIESQIRGYFRQTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILF
ECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH
SGSIEALHTLVIDGLALQGPEKNNLDALIWFFSNSVSGLILITGLSLLVHAGANKPVRLV
CCCHHHHHHHHHHCCEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHH
TFILLTTFWVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYV
HCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FSYSAVLEGQKNLKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLL
HHHHHHHCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
IDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSA
EECCCCCCHHHHHCCCCHHHHHHHHHHHHEEEEECCCHHHHCCCCCEEEEEEEECCCCHH
RHLAERILNELNSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
HHHHHHHHHHCCCCEEECCEEEEEEEEECEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEA
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEEEEEEECCCC
LGGVSPNEFIPVAENTGLITELSQWVLQKSCIQIMHWASQYNKMLSFSINISPVQLTNPQ
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCC
FPKILEKTLQEYQYPAEYLELEITENTLMGDQDEISKMLNVISDLGIKLSLDDFGKEYSS
CHHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
LNRLKTLPIDSLKIDKTFISDIHSEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
HHHHCCCCCCCEECHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSRKCHFGQGFLLSKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRF
HHCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MLILKYKNFEIQKMDNSSVFNETTLKRVPHFLVLIIILLLGLPYIGLNWGLDFSNLAITI
CEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEE
NDGKIAGSQLIESQIRGYFRQTLLQWSGFSLAAVTVLLAFTQYRLSNDKIALIIGLAILF
ECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHH
SGSIEALHTLVIDGLALQGPEKNNLDALIWFFSNSVSGLILITGLSLLVHAGANKPVRLV
CCCHHHHHHHHHHCCEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHH
TFILLTTFWVLAAIAVIYYAAVIIQIPDMWLYDSYVSRPFELISVFIYLMLMIIVYPKIY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
ASYPTILSDSVFYMSLTQVVLAIYIMLLSTTPYDSAFNIAYFLKVVVYFIPCTCFVINYV
HCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FSYSAVLEGQKNLKIKQEELKYMASHDPLTNLFNRREFEDLLDKSIANAQRNNSSLALLL
HHHHHHHCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
IDLDNFKAINDTFGHFHGDELLKQFANRLVLLVRKGDLLSRVGGDEFTLISLNIESPSSA
EECCCCCCHHHHHCCCCHHHHHHHHHHHHEEEEECCCHHHHCCCCCEEEEEEEECCCCHH
RHLAERILNELNSPYTINGKLITVTVSIGISIFPDDGNTTEDLLRKADLAMYKAKNSGKN
HHHHHHHHHHCCCCEEECCEEEEEEEEECEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
TYQFYTEQLGYSQHRESELESHLRKALQNDEFELYYQPKFNLINMEIIGAEILLRWNNEA
HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEEEEEEECCCC
LGGVSPNEFIPVAENTGLITELSQWVLQKSCIQIMHWASQYNKMLSFSINISPVQLTNPQ
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCC
FPKILEKTLQEYQYPAEYLELEITENTLMGDQDEISKMLNVISDLGIKLSLDDFGKEYSS
CHHHHHHHHHHHCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
LNRLKTLPIDSLKIDKTFISDIHSEHEKVVIIDIIIKLANELGMSIVAEGIETIPQLKYL
HHHHCCCCCCCEECHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSRKCHFGQGFLLSKPLTANEFTSIAYTKLGKTKSNAKVISLINNNRF
HHCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]