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The map label for this gene is intS [H]

Identifier: 54294005

GI number: 54294005

Start: 1192635

End: 1193879

Strand: Reverse

Name: intS [H]

Synonym: lpl1066

Alternate gene names: 54294005

Gene position: 1193879-1192635 (Counterclockwise)

Preceding gene: 54294006

Following gene: 54294002

Centisome position: 35.68

GC content: 35.18

Gene sequence:

>1245_bases
ATGGGAAATTTTACGGACACTTATATAAGAAATTTAAAAGGTAAAGATAAGCGGTATGAGGAATATGAGGGCGGAGGATT
TGGTATTCGTGTAACACCAAACCAGCTCAAATCGTGGATATATCGTTATAAAATTGGTAAAAAGACCGATAAAATTACCC
TCGGCCATTATCCTAGCATGAGCCTTGCTGATGCCAGAAAAAAATTTATTGAGTTAAGTGAATTAAGAAGATCTGGCCAA
GCCCCTAAAAAAATTATACAAATACAAAACGAAAAAAAGAATAATACCATGGATCAACTTATTAATTCCTGGTATCAAGG
TTATGTAATTAAAAATAGAAAAAAACCACTTCAAATTAAACAACAAATCGAAGCAGATATTATTCCCTTGCTCGGTCACC
TGGAATTGGAAAAAATAAAACCTATTGATATTACTAACGCACTTGATGCTATAGTTAAACGAGGTGCGCCAATCCATGCA
AATCGGGTTCTTAGTTCTTTAAAACAAGTCTTTAATTACGCAATTAGCCGCGGCAGCCTTGAAACTAACCCTGCTGCTAA
TATTAAAGCAAGAAATATTGGCGGAATTGAAAAACCTAGTGAGCGTTTTTTAGCTCTCGATGAAATTAAAACTCTTTGGC
AATTTCTTAACTCCGACCAAAGTAAAATGTCCCTGCAAACTAAAAGTGCTATCAAAATTATTCTTCTCACAGGTGTTAGA
ACTGCTGAAATTCGACTTGCTCAATGGTCACATTTTGATTTTGCTAATTCCCTATGGACAATTCCCTCAGAACTAACTAA
GGGCGGAATCACTGTCAAAATTCATTTATCTGAGTTAACAAAATCAGTAATTTTCAAGTTAAATGAAGGAAGTGACTCTC
CTTTTGTTTTATCAGGGCTAGTTCCAAACAAACCGCTCGATGAAAATGCTTTACCTCGGGCAATTAGAAGAATTCAAAAA
AGAGTTGGTATTCCTGAATGGAGTGCACATGATTTAAGGCGAACATTTGCAACTCAGCTGGGTGAAACACTTCATATTGA
TCCGGTTGTTATTGAAAAATGTCTCGGACATAAAATGCCACGTATTATGGCTACCTACAATAAGAATGAGATGTTACCTC
AAAGAAAGGAAGCTTTAGAGCGATGGTCTAAATATATTCAAGAACTTGTCGGGCATTCAGAAGAAAATAGCTCATCTCAA
TCTAATTTAATTTTGCAGACTTCTAAAAACTTATGCTTAATTTAA

Upstream 100 bases:

>100_bases
AAGGACTTTATAAAATAATCGATATCAAACCATTGCAAAAAATTTCAATCCAGAACAAAATTAAGTGTACCCCAAAGTGT
ACCCAAAAAGGAAATATAAT

Downstream 100 bases:

>100_bases
ATAACATAACCGCTAATCTTAGAGGGCCTTAGCTATTGCGTAACCATAGCGGTTTTTTATTTGTAATTATGATAACAACA
ATAAAATACTCTAAATCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MGNFTDTYIRNLKGKDKRYEEYEGGGFGIRVTPNQLKSWIYRYKIGKKTDKITLGHYPSMSLADARKKFIELSELRRSGQ
APKKIIQIQNEKKNNTMDQLINSWYQGYVIKNRKKPLQIKQQIEADIIPLLGHLELEKIKPIDITNALDAIVKRGAPIHA
NRVLSSLKQVFNYAISRGSLETNPAANIKARNIGGIEKPSERFLALDEIKTLWQFLNSDQSKMSLQTKSAIKIILLTGVR
TAEIRLAQWSHFDFANSLWTIPSELTKGGITVKIHLSELTKSVIFKLNEGSDSPFVLSGLVPNKPLDENALPRAIRRIQK
RVGIPEWSAHDLRRTFATQLGETLHIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALERWSKYIQELVGHSEENSSSQ
SNLILQTSKNLCLI

Sequences:

>Translated_414_residues
MGNFTDTYIRNLKGKDKRYEEYEGGGFGIRVTPNQLKSWIYRYKIGKKTDKITLGHYPSMSLADARKKFIELSELRRSGQ
APKKIIQIQNEKKNNTMDQLINSWYQGYVIKNRKKPLQIKQQIEADIIPLLGHLELEKIKPIDITNALDAIVKRGAPIHA
NRVLSSLKQVFNYAISRGSLETNPAANIKARNIGGIEKPSERFLALDEIKTLWQFLNSDQSKMSLQTKSAIKIILLTGVR
TAEIRLAQWSHFDFANSLWTIPSELTKGGITVKIHLSELTKSVIFKLNEGSDSPFVLSGLVPNKPLDENALPRAIRRIQK
RVGIPEWSAHDLRRTFATQLGETLHIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALERWSKYIQELVGHSEENSSSQ
SNLILQTSKNLCLI
>Mature_413_residues
GNFTDTYIRNLKGKDKRYEEYEGGGFGIRVTPNQLKSWIYRYKIGKKTDKITLGHYPSMSLADARKKFIELSELRRSGQA
PKKIIQIQNEKKNNTMDQLINSWYQGYVIKNRKKPLQIKQQIEADIIPLLGHLELEKIKPIDITNALDAIVKRGAPIHAN
RVLSSLKQVFNYAISRGSLETNPAANIKARNIGGIEKPSERFLALDEIKTLWQFLNSDQSKMSLQTKSAIKIILLTGVRT
AEIRLAQWSHFDFANSLWTIPSELTKGGITVKIHLSELTKSVIFKLNEGSDSPFVLSGLVPNKPLDENALPRAIRRIQKR
VGIPEWSAHDLRRTFATQLGETLHIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALERWSKYIQELVGHSEENSSSQS
NLILQTSKNLCLI

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=398, Percent_Identity=29.3969849246231, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI145693166, Length=392, Percent_Identity=25.765306122449, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788974, Length=398, Percent_Identity=27.1356783919598, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47178; Mature: 47047

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNFTDTYIRNLKGKDKRYEEYEGGGFGIRVTPNQLKSWIYRYKIGKKTDKITLGHYPSM
CCCCHHHHHHHCCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCCEEEECCCCCC
SLADARKKFIELSELRRSGQAPKKIIQIQNEKKNNTMDQLINSWYQGYVIKNRKKPLQIK
HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCHHHH
QQIEADIIPLLGHLELEKIKPIDITNALDAIVKRGAPIHANRVLSSLKQVFNYAISRGSL
HHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
ETNPAANIKARNIGGIEKPSERFLALDEIKTLWQFLNSDQSKMSLQTKSAIKIILLTGVR
CCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEEECCC
TAEIRLAQWSHFDFANSLWTIPSELTKGGITVKIHLSELTKSVIFKLNEGSDSPFVLSGL
EEEEEEECCCCCHHHHHHCCCCHHHCCCCEEEEEEHHHHHHHHHEEECCCCCCCEEEECC
VPNKPLDENALPRAIRRIQKRVGIPEWSAHDLRRTFATQLGETLHIDPVVIEKCLGHKMP
CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHCCCCC
RIMATYNKNEMLPQRKEALERWSKYIQELVGHSEENSSSQSNLILQTSKNLCLI
HHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
GNFTDTYIRNLKGKDKRYEEYEGGGFGIRVTPNQLKSWIYRYKIGKKTDKITLGHYPSM
CCCHHHHHHHCCCCCCHHHHCCCCCEEEEECHHHHHHHHHHHHCCCCCCEEEECCCCCC
SLADARKKFIELSELRRSGQAPKKIIQIQNEKKNNTMDQLINSWYQGYVIKNRKKPLQIK
HHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCHHHH
QQIEADIIPLLGHLELEKIKPIDITNALDAIVKRGAPIHANRVLSSLKQVFNYAISRGSL
HHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
ETNPAANIKARNIGGIEKPSERFLALDEIKTLWQFLNSDQSKMSLQTKSAIKIILLTGVR
CCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEEEECCC
TAEIRLAQWSHFDFANSLWTIPSELTKGGITVKIHLSELTKSVIFKLNEGSDSPFVLSGL
EEEEEEECCCCCHHHHHHCCCCHHHCCCCEEEEEEHHHHHHHHHEEECCCCCCCEEEECC
VPNKPLDENALPRAIRRIQKRVGIPEWSAHDLRRTFATQLGETLHIDPVVIEKCLGHKMP
CCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEECCCHHHHHHHHCCCCC
RIMATYNKNEMLPQRKEALERWSKYIQELVGHSEENSSSQSNLILQTSKNLCLI
HHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]