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The map label for this gene is nusB

Identifier: 54293711

GI number: 54293711

Start: 868385

End: 868828

Strand: Direct

Name: nusB

Synonym: lpl0764

Alternate gene names: 54293711

Gene position: 868385-868828 (Clockwise)

Preceding gene: 54293710

Following gene: 54293712

Centisome position: 25.96

GC content: 36.94

Gene sequence:

>444_bases
GTGGAAAAACAATCAATTCGTGGTAAAAGACGAGCTCGAAAATTTGCATTGCAAGCCCTTTATCAATGGCTAATGTCTGG
TACAGATCTTCATGAAATTGAAGCTCAATTCAGAACAATTAATAATATGGATAAAGTAGATGGAGAATATTTCTGCCGTC
TGTTATACGGCATTCCAACTCATGTGGAAGCTTTGGAGGCAAGTTTATTGCCGTATCTAGACAGAGAAATCAATGCATTG
AATCCAATAGAGCTTACTGTATTGAGAATTGGGTCTTTTGAATTGTTTCATTGCCCTGAGATACCTTATAAGGTCATTCT
TGATGAATCAGTATCCTTGACTAAAGAGTTTGGTTCACAAGAGGGATATCGTTACGTTAATGGGGTATTGAATAATTTGG
CAAAACAGGTTCGCTCTGTTGAAGTCAGTCTTGATAATGAATGA

Upstream 100 bases:

>100_bases
AAACAATTGATCAAATGAAAAATGAAGATAAGGAAAAGTCTTAGATAAAAATGTGAAGGGCTCACTTTTCTTGTTGTTAT
TAGAATAATATGAGGTAATT

Downstream 100 bases:

>100_bases
ATTTACCCTGATTGATCATTATTTTAAATCCATCCCATACAAGAGAAATGATGTCCTTTTTGGGATAGGGGATGATGCTG
CTTGCTTGCAGATTCCCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MEKQSIRGKRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEASLLPYLDREINAL
NPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNGVLNNLAKQVRSVEVSLDNE

Sequences:

>Translated_147_residues
MEKQSIRGKRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEASLLPYLDREINAL
NPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNGVLNNLAKQVRSVEVSLDNE
>Mature_147_residues
MEKQSIRGKRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPTHVEALEASLLPYLDREINAL
NPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNGVLNNLAKQVRSVEVSLDNE

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=123, Percent_Identity=39.0243902439024, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_LEGPA (Q5X720)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_123123.1
- HSSP:   P0A780
- ProteinModelPortal:   Q5X720
- SMR:   Q5X720
- STRING:   Q5X720
- GeneID:   3118225
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp0793
- LegioList:   lpp0793
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- ProtClustDB:   CLSK832358
- BioCyc:   LPNE297246:LPP0793-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 16969; Mature: 16969

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQSIRGKRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCHHHHHHHHHCCCH
HVEALEASLLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQ
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECCCCCEEEEECCHHHHHHHHCCC
EGYRYVNGVLNNLAKQVRSVEVSLDNE
CCHHHHHHHHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MEKQSIRGKRRARKFALQALYQWLMSGTDLHEIEAQFRTINNMDKVDGEYFCRLLYGIPT
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCHHHHHHHHHCCCH
HVEALEASLLPYLDREINALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQ
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEECCCCCEEEEECCHHHHHHHHCCC
EGYRYVNGVLNNLAKQVRSVEVSLDNE
CCHHHHHHHHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA