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The map label for this gene is nifU [H]

Identifier: 54293588

GI number: 54293588

Start: 691772

End: 692221

Strand: Direct

Name: nifU [H]

Synonym: lpl0640

Alternate gene names: 54293588

Gene position: 691772-692221 (Clockwise)

Preceding gene: 54293587

Following gene: 54293589

Centisome position: 20.68

GC content: 42.44

Gene sequence:

>450_bases
ATGAGTATGGAGTTGCGGGAACTTTACCAGGAAATCATTATCGATCACAATCGTAATCCTCGTAACCACCATGCGATGGA
GGATGCGACTACCGAGGCGAAAGGGTTTAACCCTTTATGCGGAGATAAACTGACTGTTTACCTCAAGTTGCAGGGGGATT
TGATTCATGATGTCAGTTTTGTTGGATGTGGCTGTGCTATCTCACAAGCTTCTGCATCGTTAATGACTGATGCGTTAAAG
GGTAAATCAATTAAAGAAGCTCATGAGCTATTTCATCGTGTTCATCGAATGCTGACACAAGAGGAAGAAGATTCTTTGGT
TTCCATGGATAAATTAACAGTTCTAGCCGGAGTTAAAGCATTCCCTGCGCGTGTAAAATGCGCCACTTTGGCGTGGCATA
CTTTGGAAGCGGCTTTAAACAAAGAAACAGAAGTAGTGAAAACAGAATAA

Upstream 100 bases:

>100_bases
ATGTCGCTGCGACCTCTCGTATTTCCATGTCCTTTTATAATACGTTTAAAGAAATTGATTATTGTATGGAAGCCTTACAA
CGAGTTAAAGAGGTATTCGC

Downstream 100 bases:

>100_bases
TGTTATGGCAATAGTGGCAGAGCTCGTGAAAGAGTTTGTCTGTATATTGCAAAATAGACCAGAGGCAGCTCATGTTTGGT
TTTAAGAAAAAACAGAGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIHDVSFVGCGCAISQASASLMTDALK
GKSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKAFPARVKCATLAWHTLEAALNKETEVVKTE

Sequences:

>Translated_149_residues
MSMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIHDVSFVGCGCAISQASASLMTDALK
GKSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKAFPARVKCATLAWHTLEAALNKETEVVKTE
>Mature_148_residues
SMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIHDVSFVGCGCAISQASASLMTDALKG
KSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKAFPARVKCATLAWHTLEAALNKETEVVKTE

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16633; Mature: 16502

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIHDVSF
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHH
VGCGCAISQASASLMTDALKGKSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKA
HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
FPARVKCATLAWHTLEAALNKETEVVKTE
CCCHHHHHHHHHHHHHHHHCCCCCEEECC
>Mature Secondary Structure 
SMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIHDVSF
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHH
VGCGCAISQASASLMTDALKGKSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKA
HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
FPARVKCATLAWHTLEAALNKETEVVKTE
CCCHHHHHHHHHHHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]