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The map label for this gene is fis [H]

Identifier: 54293536

GI number: 54293536

Start: 636484

End: 636765

Strand: Direct

Name: fis [H]

Synonym: lpl0587

Alternate gene names: 54293536

Gene position: 636484-636765 (Clockwise)

Preceding gene: 54293535

Following gene: 54293539

Centisome position: 19.02

GC content: 38.65

Gene sequence:

>282_bases
ATGACAACAATCAGTAATGATGCAGGAGATACCACTGCTTCACTAGCCGAAAGCGTGACTCAATCCGTACAAAAATATTT
TTCAGAGCTTAAGGGAACTGATCCTGTTGACTTATACCAGTTTGTACTTGAAGAAATTGAGACCCCTCTATTTCGTGCAG
TAATGGAACATTGCAAGTATAATCAGTCCCGCGCTGCAATCATGCTGGGAATTAGTCGTGGAACTTTAAGAACTAAATTA
AGACGTTATTTTGATGATAAATACGTTGGTACAAGGGATTAA

Upstream 100 bases:

>100_bases
CAGTATATATTGAATTTTAATGCAGTTTTTTCTGTTCTGCCCTTGTCTCGTATTGCTCAATTCGGTAATATACCGCTTTT
AAAAGGAGGAGCTAATAATA

Downstream 100 bases:

>100_bases
GAAAGATTGATAATAAAAAGGGAGCTAAGGCTCCCTTTTTATTATCAAAGAATATTTCATTTTATTCAGCAAACATGGAG
CTTACTGACTCCTCAACATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 92

Protein sequence:

>93_residues
MTTISNDAGDTTASLAESVTQSVQKYFSELKGTDPVDLYQFVLEEIETPLFRAVMEHCKYNQSRAAIMLGISRGTLRTKL
RRYFDDKYVGTRD

Sequences:

>Translated_93_residues
MTTISNDAGDTTASLAESVTQSVQKYFSELKGTDPVDLYQFVLEEIETPLFRAVMEHCKYNQSRAAIMLGISRGTLRTKL
RRYFDDKYVGTRD
>Mature_92_residues
TTISNDAGDTTASLAESVTQSVQKYFSELKGTDPVDLYQFVLEEIETPLFRAVMEHCKYNQSRAAIMLGISRGTLRTKLR
RYFDDKYVGTRD

Specific function: Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters [H]

COG id: COG2901

COG function: function code KL; Factor for inversion stimulation Fis, transcriptional activator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory fis family [H]

Homologues:

Organism=Escherichia coli, GI1789661, Length=83, Percent_Identity=45.7831325301205, Blast_Score=86, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005412
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197 [H]

Pfam domain/function: PF02954 HTH_8 [H]

EC number: NA

Molecular weight: Translated: 10591; Mature: 10460

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTISNDAGDTTASLAESVTQSVQKYFSELKGTDPVDLYQFVLEEIETPLFRAVMEHCKY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHCC
NQSRAAIMLGISRGTLRTKLRRYFDDKYVGTRD
CCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTISNDAGDTTASLAESVTQSVQKYFSELKGTDPVDLYQFVLEEIETPLFRAVMEHCKY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHCC
NQSRAAIMLGISRGTLRTKLRRYFDDKYVGTRD
CCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA