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The map label for this gene is skp [H]

Identifier: 54293497

GI number: 54293497

Start: 596020

End: 596520

Strand: Direct

Name: skp [H]

Synonym: lpl0546

Alternate gene names: 54293497

Gene position: 596020-596520 (Clockwise)

Preceding gene: 54293496

Following gene: 54293498

Centisome position: 17.81

GC content: 38.92

Gene sequence:

>501_bases
ATGAAACGTCTGGGTGCGGTGTTAGTCGCATTATTTTTGGGTTTGTTCGGCACGACTGTGTTTGCTGATTGGGCAAAGAT
AGGTGTAGTTGATTTACAAAAAATCATGCAAACCTCAAATCAAATGAAGGAAATCCAACAGAAGTTGGAAAAAGAATTTA
AGCCTCGTCGAGACAAGCTTGTCGCAATGGAAGCAAGCTTGAAAAGCGACATGGAAAAATTTAAGCGTGATAGTGCTATA
ATGAGCGCAAGCCAAAAGAAAGAATTGGAGAAGAAAATTGTTGCGTCACAACAACAGTTTGAACGTGATGGACAACAATA
TCAGCAAGAATTGAGCACTGCTCACAATGAAGCTATGGAAGGTTTGTATAATAAGGTTCGTACTGCCATTACCAAAATTG
CCAAGGATGAGAAGTACGATATTATTGTTCAGAAAGATGCAGCGCCCTTCAGCAGCGAATCTCTTGATGTAACAGATAAA
GTTATCAAAGCAATTAATTAA

Upstream 100 bases:

>100_bases
TAGAGTAAGCGGATTTTAGTATTTTAAAAACTAGTGCTGTACATATCGCAACCTTTTTCGAATTGTGCTAGCATTTCAAA
CTTTAAATTAGGAGATCATT

Downstream 100 bases:

>100_bases
TTCGGCGGATGCGTTGCTAACCTTAGAGGAACTGGCAAACTATTTAAATGGCGTCTGGCATGGCAATGCCAATCACGCCA
TTTTTAGTCTATCCTCGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MKRLGAVLVALFLGLFGTTVFADWAKIGVVDLQKIMQTSNQMKEIQQKLEKEFKPRRDKLVAMEASLKSDMEKFKRDSAI
MSASQKKELEKKIVASQQQFERDGQQYQQELSTAHNEAMEGLYNKVRTAITKIAKDEKYDIIVQKDAAPFSSESLDVTDK
VIKAIN

Sequences:

>Translated_166_residues
MKRLGAVLVALFLGLFGTTVFADWAKIGVVDLQKIMQTSNQMKEIQQKLEKEFKPRRDKLVAMEASLKSDMEKFKRDSAI
MSASQKKELEKKIVASQQQFERDGQQYQQELSTAHNEAMEGLYNKVRTAITKIAKDEKYDIIVQKDAAPFSSESLDVTDK
VIKAIN
>Mature_166_residues
MKRLGAVLVALFLGLFGTTVFADWAKIGVVDLQKIMQTSNQMKEIQQKLEKEFKPRRDKLVAMEASLKSDMEKFKRDSAI
MSASQKKELEKKIVASQQQFERDGQQYQQELSTAHNEAMEGLYNKVRTAITKIAKDEKYDIIVQKDAAPFSSESLDVTDK
VIKAIN

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

Organism=Escherichia coli, GI1786375, Length=141, Percent_Identity=28.3687943262411, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18877; Mature: 18877

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLGAVLVALFLGLFGTTVFADWAKIGVVDLQKIMQTSNQMKEIQQKLEKEFKPRRDKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VAMEASLKSDMEKFKRDSAIMSASQKKELEKKIVASQQQFERDGQQYQQELSTAHNEAME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLYNKVRTAITKIAKDEKYDIIVQKDAAPFSSESLDVTDKVIKAIN
HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKRLGAVLVALFLGLFGTTVFADWAKIGVVDLQKIMQTSNQMKEIQQKLEKEFKPRRDKL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VAMEASLKSDMEKFKRDSAIMSASQKKELEKKIVASQQQFERDGQQYQQELSTAHNEAME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLYNKVRTAITKIAKDEKYDIIVQKDAAPFSSESLDVTDKVIKAIN
HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA