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The map label for this gene is ysdC [H]

Identifier: 54293473

GI number: 54293473

Start: 567843

End: 568967

Strand: Direct

Name: ysdC [H]

Synonym: lpl0522

Alternate gene names: 54293473

Gene position: 567843-568967 (Clockwise)

Preceding gene: 54293472

Following gene: 54293474

Centisome position: 16.97

GC content: 41.51

Gene sequence:

>1125_bases
ATGATAAAGCATGCGATTCTTGTTAGCGGATTGATTGTTTCCTTTTTAGCTTCAGCAGCTGAAATGTCATTTTTGGCCCA
ATTGACGGAGGTACCTGGTGCCTCTGGGTACGAAAAAAATGTTCGTCATTTGGTGCAAAAACAGTGGCAACCCTATATGG
CGGAGCTAAAGATCGATGGTATGGGTAATTTGATCGGCCAGCGTAGAGATAATCAGAAAGGACCGAAATTACTCTTCATG
GCACACCTTGATGAAACGGGGTTTATGGTGGAATCCATAACACCAGATGGTTTTTTGAAAGTTATCCCTTTAGGAGGGAT
CGCAAACTCGGTCATCTATGCTCAACGCTGGACAGTTTCAACACCTAAAGGATCTGTATTAGCTTATTCTGGTATGGATT
CTCCGCATTTATTGGGTGATAAGAAAATGTTAGGGTCCCCTGATATCAATGCCCTGTTTTTAGATATCGGAGCAGAGAAT
AAAGAACAAGCTCAGAAAGAATTTGCAATCCAACCTGGCCTTGAAGTGACACCAGTAAGTGAATTTAGCCAATTAAGCAA
GAACAGATTTTTAGGCAAAGCCTTGGATGATCGCCTAGGATTAGCTGTCATTAGTGACGCTCTGAGAGCAGTGAAACAAC
AACCCAATCAATTATATCTTGCTGCCACAGTGCAAGAGGAAGTTGGTATGCGGGGTGCCAGTACAGTATACAAAGCGACT
CATCCAGATATTGCAATTAATGTTGAAGTGGGAATCGCAGATGATTATCCAATGCTGCTGGCTGATAGAAAAGGTCGAAT
TGGTTTGGGGAAGGGGCCATCCTTATTTGTTTATGACAAATCAATGATTCCCAATCAGGAGTTAATTAACTGGATAATGG
AACTTGCTAATAAAAATAATATCCCGCTACAACTTGAGGTGGAACCAGGATATGGTGAAGATGGCTCTAAGGTTCAGGCA
TCAGGCATGGGCGTTCCTGTCGTCAACATTGGTATCCCTATTCGATATGCACACCAACATGCCGGGATATTTGATAAAAG
AGATTACGATAATACAGTTAAATTGTTGAGCTTGATTGCTGAGAATTTGAATCAGGAAGTGGTTGACAAGATTAAAAAGA
GTTAA

Upstream 100 bases:

>100_bases
GCCCGGATTCAAGGCCGTTAACAAAATTTGAGCTGCGTGGTGAGCGTCTAGGCCATGGGGTATGGGATCTGGTTTTTATA
AAAAAATAAGGAAGTTATCT

Downstream 100 bases:

>100_bases
CAATACTTTGATCTCCCATTGTCCATTGTGTAATATTGGTGTCCTATAAATAGTTTATAAATAAAGGAAGTATTATTATG
GATTTTGTAAGTGAAATGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MIKHAILVSGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQPYMAELKIDGMGNLIGQRRDNQKGPKLLFM
AHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVSTPKGSVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAEN
KEQAQKEFAIQPGLEVTPVSEFSQLSKNRFLGKALDDRLGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNNIPLQLEVEPGYGEDGSKVQA
SGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLSLIAENLNQEVVDKIKKS

Sequences:

>Translated_374_residues
MIKHAILVSGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQPYMAELKIDGMGNLIGQRRDNQKGPKLLFM
AHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVSTPKGSVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAEN
KEQAQKEFAIQPGLEVTPVSEFSQLSKNRFLGKALDDRLGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNNIPLQLEVEPGYGEDGSKVQA
SGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLSLIAENLNQEVVDKIKKS
>Mature_374_residues
MIKHAILVSGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQPYMAELKIDGMGNLIGQRRDNQKGPKLLFM
AHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVSTPKGSVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAEN
KEQAQKEFAIQPGLEVTPVSEFSQLSKNRFLGKALDDRLGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNNIPLQLEVEPGYGEDGSKVQA
SGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLSLIAENLNQEVVDKIKKS

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=349, Percent_Identity=33.5243553008596, Blast_Score=211, Evalue=7e-56,
Organism=Escherichia coli, GI1788727, Length=352, Percent_Identity=32.3863636363636, Blast_Score=182, Evalue=4e-47,
Organism=Escherichia coli, GI87082417, Length=353, Percent_Identity=31.4447592067989, Blast_Score=164, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 40911; Mature: 40911

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHAILVSGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQPYMAELKIDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
MGNLIGQRRDNQKGPKLLFMAHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVS
CHHHHHCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEECCCHHHEEEEEEEEEE
TPKGSVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAENKEQAQKEFAIQPGLEVTPVS
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHH
EFSQLSKNRFLGKALDDRLGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCEEEEC
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNN
CCCEEEEEEEECCCCCCEEEECCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
IPLQLEVEPGYGEDGSKVQASGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLSLIA
CCEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEECHHHCCCCCCCCCCHHHHHHHHHH
ENLNQEVVDKIKKS
HHCCHHHHHHHHCC
>Mature Secondary Structure
MIKHAILVSGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQPYMAELKIDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECC
MGNLIGQRRDNQKGPKLLFMAHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVS
CHHHHHCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEECCCHHHEEEEEEEEEE
TPKGSVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAENKEQAQKEFAIQPGLEVTPVS
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCHH
EFSQLSKNRFLGKALDDRLGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCEEEEC
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNN
CCCEEEEEEEECCCCCCEEEECCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
IPLQLEVEPGYGEDGSKVQASGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLSLIA
CCEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEECHHHCCCCCCCCCCHHHHHHHHHH
ENLNQEVVDKIKKS
HHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]