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The map label for this gene is arpC [H]

Identifier: 54293423

GI number: 54293423

Start: 514459

End: 515811

Strand: Direct

Name: arpC [H]

Synonym: lpl0472

Alternate gene names: 54293423

Gene position: 514459-515811 (Clockwise)

Preceding gene: 54293421

Following gene: 54293424

Centisome position: 15.38

GC content: 38.14

Gene sequence:

>1353_bases
ATGATGTGCATGCTTAAAAAATTAATGTTCTTATTATTGTTGGGAGCAGGTTTGTTAAGCTGTGGTCAAAGCACTGATCA
GCAAATTTCCAATATTATAACACCGAAGCAATTCCCCTCCAGTCCCAGGGATTATCGACCAGTTCAGGAATTGCCTTATT
TGGCCTGGTGGAAGCAATTTCAAGATCCAGAATTGGATCGTTTAATTGATACTGGATTGAAGACCAATATGGACATTCAT
ATTGCAATGGCTAATTTACAGCAAGCTCAAGGAGAGTTACAGCAAGTGAAGTTGAGTTGGATACCTAATGTTCAAATATT
GGGAGGGTATTCAACTAATCCTGCTCTTGGTGTGCCAGGAGGGTTTTATGGAATATGGCCAAGTTATATTTTGAATATTA
TGCAACTTTATACTCAGCAAAAGCGTGCTCAATATCAGGTCCAATATCATCAGGCAGCAATCGATGGTTTGCGTTTGACC
TTGATTGGTCAGGTGGCAGCGGCTTATTTCACTTTGATTGCACAGTTGGAGCAACTTAAATTATTGTATAAACTGGATAG
GGATTTAAAGTCGTTAATTGCTTTGAGCAGGAAAGAAATCAAGATAGGATTAAAAAATGATATTGATTTGGCTCAGTTGC
AATCCAACGAGCGCTTGATTGCAGCACAAATAAAACCCATTAAACACAACATTGTCGTTAGTCAGAATGCGTTGCGTTAT
TTAATAAATGAGAATCCTGGTTTAATCAAAAGCAAAAATAATTTTGCTCAATTGGATTTTACCCGCTTTAAACCCGGAAG
TTTACCCGCTACTGTATTAGGTAATCGCCCTGATATGAAGATGGCAGAGTATTCCCTAAAAGCAGCTCGTGCGGGTATTT
TTGTTGCTTATAGTGAATTTTTTCCTGTTATGCAGTTGGATGATTTTATTGGAGAGGCACATTTGCCGGATAGTACGTTT
GAACAAGCGACCGATGCGTACGTAAACTGGACAATTAATCCCAATACTCTGGGTAAAATTTCAGTTAGCAAGGGGGTTTA
TAATGCAAAATTGGCCGAATACGTTAAGACAGTCCGATTAATTTTAAAAGAAGTTGATAATGCTTTTTCAGCTAATAAAC
GCATGAGAGAGCAATTTTTATCTTATCGGCACGCACAAGAAGATTATCAGCATAAATACAAATTACAAAATGGTTTATTA
AAATCAGGGTTAATGTCCTATAAAGAGTTATTGGAGAGTAAGGTTTATCTGGATACCCTGGCGCTCTCAACAAATCAGGC
TAAGCTGGAATTGGCCATGTCACTGGTTATGTTGTATCAAGATTTGGCTGGTGGGTATGCCTGTAGTGACTAA

Upstream 100 bases:

>100_bases
ATTTTTTTGATCATGAGAGCTCCTTGTTGAAATTTAAATATACTTTCACCATTAGATGAATTATAAATTACAATGATAAA
CATTCACTTTGAAATAAACG

Downstream 100 bases:

>100_bases
ATCAGTTTGGTTTGTAACACATTGATTTTAAAAGTCGCCAGGCGGGCTAAAATTGCAGTTCTCGTCTCTTGAGCTGTTCG
ATGAGATAAGTTAATTTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MMCMLKKLMFLLLLGAGLLSCGQSTDQQISNIITPKQFPSSPRDYRPVQELPYLAWWKQFQDPELDRLIDTGLKTNMDIH
IAMANLQQAQGELQQVKLSWIPNVQILGGYSTNPALGVPGGFYGIWPSYILNIMQLYTQQKRAQYQVQYHQAAIDGLRLT
LIGQVAAAYFTLIAQLEQLKLLYKLDRDLKSLIALSRKEIKIGLKNDIDLAQLQSNERLIAAQIKPIKHNIVVSQNALRY
LINENPGLIKSKNNFAQLDFTRFKPGSLPATVLGNRPDMKMAEYSLKAARAGIFVAYSEFFPVMQLDDFIGEAHLPDSTF
EQATDAYVNWTINPNTLGKISVSKGVYNAKLAEYVKTVRLILKEVDNAFSANKRMREQFLSYRHAQEDYQHKYKLQNGLL
KSGLMSYKELLESKVYLDTLALSTNQAKLELAMSLVMLYQDLAGGYACSD

Sequences:

>Translated_450_residues
MMCMLKKLMFLLLLGAGLLSCGQSTDQQISNIITPKQFPSSPRDYRPVQELPYLAWWKQFQDPELDRLIDTGLKTNMDIH
IAMANLQQAQGELQQVKLSWIPNVQILGGYSTNPALGVPGGFYGIWPSYILNIMQLYTQQKRAQYQVQYHQAAIDGLRLT
LIGQVAAAYFTLIAQLEQLKLLYKLDRDLKSLIALSRKEIKIGLKNDIDLAQLQSNERLIAAQIKPIKHNIVVSQNALRY
LINENPGLIKSKNNFAQLDFTRFKPGSLPATVLGNRPDMKMAEYSLKAARAGIFVAYSEFFPVMQLDDFIGEAHLPDSTF
EQATDAYVNWTINPNTLGKISVSKGVYNAKLAEYVKTVRLILKEVDNAFSANKRMREQFLSYRHAQEDYQHKYKLQNGLL
KSGLMSYKELLESKVYLDTLALSTNQAKLELAMSLVMLYQDLAGGYACSD
>Mature_450_residues
MMCMLKKLMFLLLLGAGLLSCGQSTDQQISNIITPKQFPSSPRDYRPVQELPYLAWWKQFQDPELDRLIDTGLKTNMDIH
IAMANLQQAQGELQQVKLSWIPNVQILGGYSTNPALGVPGGFYGIWPSYILNIMQLYTQQKRAQYQVQYHQAAIDGLRLT
LIGQVAAAYFTLIAQLEQLKLLYKLDRDLKSLIALSRKEIKIGLKNDIDLAQLQSNERLIAAQIKPIKHNIVVSQNALRY
LINENPGLIKSKNNFAQLDFTRFKPGSLPATVLGNRPDMKMAEYSLKAARAGIFVAYSEFFPVMQLDDFIGEAHLPDSTF
EQATDAYVNWTINPNTLGKISVSKGVYNAKLAEYVKTVRLILKEVDNAFSANKRMREQFLSYRHAQEDYQHKYKLQNGLL
KSGLMSYKELLESKVYLDTLALSTNQAKLELAMSLVMLYQDLAGGYACSD

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=467, Percent_Identity=23.5546038543897, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI2367348, Length=331, Percent_Identity=22.0543806646526, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 50926; Mature: 50926

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMCMLKKLMFLLLLGAGLLSCGQSTDQQISNIITPKQFPSSPRDYRPVQELPYLAWWKQF
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHC
QDPELDRLIDTGLKTNMDIHIAMANLQQAQGELQQVKLSWIPNVQILGGYSTNPALGVPG
CCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
GFYGIWPSYILNIMQLYTQQKRAQYQVQYHQAAIDGLRLTLIGQVAAAYFTLIAQLEQLK
CHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LLYKLDRDLKSLIALSRKEIKIGLKNDIDLAQLQSNERLIAAQIKPIKHNIVVSQNALRY
HHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHCCCCCEEEEECCCCHHEEEECHHHHHH
LINENPGLIKSKNNFAQLDFTRFKPGSLPATVLGNRPDMKMAEYSLKAARAGIFVAYSEF
HHCCCCCCEECCCCCEEEEEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHCCEEEEHHHH
FPVMQLDDFIGEAHLPDSTFEQATDAYVNWTINPNTLGKISVSKGVYNAKLAEYVKTVRL
CCHHHHHHHHCCCCCCCHHHHHCCCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHH
ILKEVDNAFSANKRMREQFLSYRHAQEDYQHKYKLQNGLLKSGLMSYKELLESKVYLDTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSTNQAKLELAMSLVMLYQDLAGGYACSD
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMCMLKKLMFLLLLGAGLLSCGQSTDQQISNIITPKQFPSSPRDYRPVQELPYLAWWKQF
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHC
QDPELDRLIDTGLKTNMDIHIAMANLQQAQGELQQVKLSWIPNVQILGGYSTNPALGVPG
CCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
GFYGIWPSYILNIMQLYTQQKRAQYQVQYHQAAIDGLRLTLIGQVAAAYFTLIAQLEQLK
CHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
LLYKLDRDLKSLIALSRKEIKIGLKNDIDLAQLQSNERLIAAQIKPIKHNIVVSQNALRY
HHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHCCCCCEEEEECCCCHHEEEECHHHHHH
LINENPGLIKSKNNFAQLDFTRFKPGSLPATVLGNRPDMKMAEYSLKAARAGIFVAYSEF
HHCCCCCCEECCCCCEEEEEEECCCCCCCHHCCCCCCCCHHHHHHHHHHHCCEEEEHHHH
FPVMQLDDFIGEAHLPDSTFEQATDAYVNWTINPNTLGKISVSKGVYNAKLAEYVKTVRL
CCHHHHHHHHCCCCCCCHHHHHCCCCEEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHH
ILKEVDNAFSANKRMREQFLSYRHAQEDYQHKYKLQNGLLKSGLMSYKELLESKVYLDTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSTNQAKLELAMSLVMLYQDLAGGYACSD
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]