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The map label for this gene is scoP [H]

Identifier: 54293407

GI number: 54293407

Start: 499571

End: 500212

Strand: Direct

Name: scoP [H]

Synonym: lpl0456

Alternate gene names: 54293407

Gene position: 499571-500212 (Clockwise)

Preceding gene: 54293406

Following gene: 54293408

Centisome position: 14.93

GC content: 35.98

Gene sequence:

>642_bases
ATGAACATAAAGATAAAAGGGGGCGCTGTAACAATCACTGTATTGGCCCTGGTCAGTTTATTGGCTGGTATTTATATCTC
TCAGAATTTTCATTTTAAAAAGAAGATCAATGTGGCGGATTTTCACGGCACTTATCTTGAAAATCCAAGAACAGTCAATA
ATTTTAGCTTAACAGGCACAGATCAGAAGGTTTTTGATAACTCAAGTCTGCAAGGTCGTTGGACTTTAGTATTTTTTGGA
TTTACCAATTGTGGTTATCTATGCCCGACTACCATGGCAGAACTTGGAAAAATGTATCGAATTCTGGAAAAGAAAGGGGT
GAAAAATTTACCTCAAGTTGTGATGATATCTATTGATCCGCAAAGAGACAGTCTTGATAAATTGGGCAGTTATGTCACTT
CTTTCCATAAATCATTTTATGGTGCAAGAGGAGAAGAGGATTCAATTAAATCAATGACCCATGAAATGGGCATTGCTTAC
GCAAAAATAAACAATAAAGAGAGTTCGGAGCCTGAAAATTATGATATACAACATAGTGGGGCCGTAATGCTATTTAATCC
TCAAGGTGAGTTAAATGCATTTTTTACAACACCACATCATGCGGATCTCTTAGCTAAGGATTATATCTTATTGGTATCTT
AA

Upstream 100 bases:

>100_bases
TAAACCAGTTGTTGCTATGCAAACATTCCGATTTTCTATTCTGTACCTAATGCTGTTGTTTGTCTTTTTATTAGTAGATC
ACTATTTTTAAGGGGTTAGA

Downstream 100 bases:

>100_bases
CCTGTAATTCGATATTTTACCTCTACAGGAGCAATAGCTAAGCAGACTTGTTTTATTTATGTCAAAGAAATCTATCTAGA
ATGCATTAGTTAATTAATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGTDQKVFDNSSLQGRWTLVFFG
FTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDPQRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAY
AKINNKESSEPENYDIQHSGAVMLFNPQGELNAFFTTPHHADLLAKDYILLVS

Sequences:

>Translated_213_residues
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGTDQKVFDNSSLQGRWTLVFFG
FTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDPQRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAY
AKINNKESSEPENYDIQHSGAVMLFNPQGELNAFFTTPHHADLLAKDYILLVS
>Mature_213_residues
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGTDQKVFDNSSLQGRWTLVFFG
FTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDPQRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAY
AKINNKESSEPENYDIQHSGAVMLFNPQGELNAFFTTPHHADLLAKDYILLVS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=142, Percent_Identity=28.8732394366197, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI281182722, Length=142, Percent_Identity=28.8732394366197, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI281182716, Length=142, Percent_Identity=28.8732394366197, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI153791313, Length=142, Percent_Identity=28.8732394366197, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI4759068, Length=196, Percent_Identity=28.0612244897959, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17531419, Length=156, Percent_Identity=25.6410256410256, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6319498, Length=137, Percent_Identity=28.4671532846715, Blast_Score=73, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6319511, Length=195, Percent_Identity=24.1025641025641, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19920710, Length=149, Percent_Identity=24.1610738255034, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23830; Mature: 23830

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGT
CEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCCCCCEEECCC
DQKVFDNSSLQGRWTLVFFGFTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDP
CHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
QRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAYAKINNKESSEPENYDIQHSG
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCEECCC
AVMLFNPQGELNAFFTTPHHADLLAKDYILLVS
EEEEECCCCCCEEEEECCCCHHHHHCCEEEEEC
>Mature Secondary Structure
MNIKIKGGAVTITVLALVSLLAGIYISQNFHFKKKINVADFHGTYLENPRTVNNFSLTGT
CEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCCCCCEEECCC
DQKVFDNSSLQGRWTLVFFGFTNCGYLCPTTMAELGKMYRILEKKGVKNLPQVVMISIDP
CHHHCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
QRDSLDKLGSYVTSFHKSFYGARGEEDSIKSMTHEMGIAYAKINNKESSEPENYDIQHSG
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCCEECCC
AVMLFNPQGELNAFFTTPHHADLLAKDYILLVS
EEEEECCCCCCEEEEECCCCHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]